View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1107_low_25 (Length: 455)

Name: NF1107_low_25
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1107_low_25
NF1107_low_25
[»] chr7 (5 HSPs)
chr7 (30-168)||(25670922-25671060)
chr7 (187-419)||(25670648-25670871)
chr7 (257-303)||(25670847-25670893)
chr7 (93-166)||(47501661-47501734)
chr7 (311-362)||(21568757-21568808)
[»] chr4 (6 HSPs)
chr4 (30-169)||(5625132-5625271)
chr4 (349-409)||(437504-437565)
chr4 (306-366)||(2987084-2987144)
chr4 (318-367)||(46796926-46796974)
chr4 (324-380)||(6364062-6364117)
chr4 (307-339)||(28615215-28615247)
[»] chr8 (8 HSPs)
chr8 (32-166)||(39726388-39726522)
chr8 (307-366)||(2833445-2833504)
chr8 (307-366)||(2840255-2840314)
chr8 (307-366)||(2844942-2845001)
chr8 (357-413)||(42237490-42237547)
chr8 (120-168)||(31606189-31606237)
chr8 (318-413)||(10114397-10114491)
chr8 (318-368)||(40859831-40859881)
[»] chr5 (6 HSPs)
chr5 (311-366)||(39105364-39105419)
chr5 (311-410)||(9202819-9202918)
chr5 (311-368)||(28776875-28776932)
chr5 (344-413)||(29588813-29588881)
chr5 (307-402)||(11835173-11835268)
chr5 (318-366)||(20982250-20982297)
[»] chr1 (5 HSPs)
chr1 (94-168)||(13349844-13349918)
chr1 (327-366)||(15942249-15942288)
chr1 (318-367)||(10744215-10744264)
chr1 (318-366)||(5894278-5894326)
chr1 (311-367)||(47498957-47499013)
[»] chr6 (1 HSPs)
chr6 (311-366)||(264271-264326)
[»] chr3 (2 HSPs)
chr3 (311-409)||(402614-402711)
chr3 (311-387)||(23815953-23816028)
[»] chr2 (3 HSPs)
chr2 (344-413)||(18962106-18962175)
chr2 (319-359)||(36534696-36534736)
chr2 (344-380)||(42826319-42826355)


Alignment Details
Target: chr7 (Bit Score: 131; Significance: 9e-68; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 30 - 168
Target Start/End: Complemental strand, 25671060 - 25670922
Alignment:
Q  30 attttttcttatactgttggtgcttttagtctttggggtggtggatttctttatcattggggtgttattgattattctggtggctatgttattcatcttt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  25671060 attttttcttatactgttggtgcttttagtctttggggtggtggatttctttatcattggggtgtgattgattattctggtggttatgttattcatcttt 25670961  T
Q  130 cttctggaattgctggtttcactgctgcttattgggtaa 168  Q
    |||||||||||||||||||||||||||||||||||||||    
T  25670960 cttctggaattgctggtttcactgctgcttattgggtaa 25670922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 187 - 419
Target Start/End: Complemental strand, 25670871 - 25670648
Alignment:
Q  187 acccttcatctaattttgcctagaaacttaaagggtaccctccctttcatcatacattcatatgggg-gcataaagtttgtattttcttcacaacccttc 285  Q
    ||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||| |  |||||    
T  25670871 acccttcatttaattttgcttaaaaacttaaagggtaccctccctttcatcatacattcatatggggtgcataaagtttgtattttaatcatagtccttc 25670772  T
Q  286 atctaattttgcttaaaagggttattttgcatcttataacataagtgcttatcatgaaaagtccttatgtataagctattttttataacaaaagagaata 385  Q
    |||||||||||||||||||  || ||||||| |||||||  ||      || |||   |||| ||||||||||||||| |||||||||||||||||||||    
T  25670771 atctaattttgcttaaaagactttttttgcagcttataagtta------taacat---aagtgcttatgtataagcta-tttttataacaaaagagaata 25670682  T
Q  386 aaaggtaaattgttttcatataagctatcaattg 419  Q
    |||||| || ||||||||||||||||||||||||    
T  25670681 aaaggtgaagtgttttcatataagctatcaattg 25670648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 303
Target Start/End: Complemental strand, 25670893 - 25670847
Alignment:
Q  257 taaagtttgtattttcttcacaacccttcatctaattttgcttaaaa 303  Q
    |||| |||||||||| ||||||||||||||| |||||||||||||||    
T  25670893 taaattttgtatttttttcacaacccttcatttaattttgcttaaaa 25670847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 93 - 166
Target Start/End: Original strand, 47501661 - 47501734
Alignment:
Q  93 gttattgattattctggtggctatgttattcatctttcttctggaattgctggtttcactgctgcttattgggt 166  Q
    |||||||||| | |||| || ||||||||||| || ||| ||||  |||||||||| |||||||||||||||||    
T  47501661 gttattgattttgctgggggatatgttattcacctctctgctggtgttgctggttttactgctgcttattgggt 47501734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 362
Target Start/End: Complemental strand, 21568808 - 21568757
Alignment:
Q  311 tttgcatcttataacataagtgcttatcatgaaaagtccttatgtataagct 362  Q
    |||||| |||||| |||||||||||||||||| |||  ||||||||||||||    
T  21568808 tttgcagcttatagcataagtgcttatcatgataagcacttatgtataagct 21568757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 30 - 169
Target Start/End: Complemental strand, 5625271 - 5625132
Alignment:
Q  30 attttttcttatactgttggtgcttttagtctttggggtggtggatttctttatcattggggtgttattgattattctggtggctatgttattcatcttt 129  Q
    ||||| ||||| |||||||||||||||||| | ||||||||||||||| | |||||||||||||| |||||||  |||||||||||||||||||||||||    
T  5625271 attttctcttacactgttggtgcttttagtatatggggtggtggatttttgtatcattggggtgtcattgatttctctggtggctatgttattcatcttt 5625172  T
Q  130 cttctggaattgctggtttcactgctgcttattgggtaaa 169  Q
    |||||||||||| ||| |||||||| ||||||||||||||    
T  5625171 cttctggaattggtggattcactgcagcttattgggtaaa 5625132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 349 - 409
Target Start/End: Complemental strand, 437565 - 437504
Alignment:
Q  349 cttatgtataagctattttttataacaaaagagaata-aaaggtaaattgttttcatataag 409  Q
    |||||||||||||||||||||||| ||||||| || | |||| |||||||| ||||||||||    
T  437565 cttatgtataagctattttttatagcaaaagataaaataaagttaaattgtgttcatataag 437504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 366
Target Start/End: Original strand, 2987084 - 2987144
Alignment:
Q  306 gttattttgcatcttataacataagtgcttatcatgaaaagtccttatgtataagctattt 366  Q
    |||| |||||| ||||||||||||||| ||||||||| |||  ||||| ||||||||||||    
T  2987084 gttaatttgcagcttataacataagtgtttatcatgataagcacttatttataagctattt 2987144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 367
Target Start/End: Original strand, 46796926 - 46796974
Alignment:
Q  318 cttataacataagtgcttatcatgaaaagtccttatgtataagctatttt 367  Q
    ||||||||||||||||||||||| | |||| |||||| ||||||||||||    
T  46796926 cttataacataagtgcttatcat-ataagttcttatgcataagctatttt 46796974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 380
Target Start/End: Original strand, 6364062 - 6364117
Alignment:
Q  324 acataagtgcttatcatgaaaagtccttatgtataagctattttttataacaaaaga 380  Q
    |||||||||||||||| || |||  ||||||||||||||| ||| ||||||||||||    
T  6364062 acataagtgcttatcaagataagcacttatgtataagcta-tttctataacaaaaga 6364117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 339
Target Start/End: Original strand, 28615215 - 28615247
Alignment:
Q  307 ttattttgcatcttataacataagtgcttatca 339  Q
    |||||||||| ||||||||||||||||||||||    
T  28615215 ttattttgcagcttataacataagtgcttatca 28615247  T

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Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 32 - 166
Target Start/End: Complemental strand, 39726522 - 39726388
Alignment:
Q  32 tttttcttatactgttggtgcttttagtctttggggtggtggatttctt-tatcattggggtgttattgattattctggtggctatgttattcatctttc 130  Q
    ||||||||||||| |||||||||||||| | ||||||||||| |||||| | ||| ||||||||||| |||||||||||||| |||||||||||||||||    
T  39726522 tttttcttatactattggtgcttttagtttgtggggtggtgg-tttcttgtttcaatggggtgttatggattattctggtggttatgttattcatctttc 39726424  T
Q  131 ttctggaattgctggtttcactgctgcttattgggt 166  Q
    |||||| |||||||||||||| ||||||||||||||    
T  39726423 ttctgggattgctggtttcaccgctgcttattgggt 39726388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 366
Target Start/End: Complemental strand, 2833504 - 2833445
Alignment:
Q  307 ttattttgcatcttataacataagtgcttatcatgaaaagtccttatgtataagctattt 366  Q
    |||||||||| |||||| |||||||||||||||||| |||| |||||| |||||||||||    
T  2833504 ttattttgcagcttatagcataagtgcttatcatgataagtgcttatgaataagctattt 2833445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 366
Target Start/End: Original strand, 2840255 - 2840314
Alignment:
Q  307 ttattttgcatcttataacataagtgcttatcatgaaaagtccttatgtataagctattt 366  Q
    |||||||||| |||||| |||||||||||||||||| |||| |||||| |||||||||||    
T  2840255 ttattttgcagcttatagcataagtgcttatcatgataagtgcttatgaataagctattt 2840314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 366
Target Start/End: Original strand, 2844942 - 2845001
Alignment:
Q  307 ttattttgcatcttataacataagtgcttatcatgaaaagtccttatgtataagctattt 366  Q
    |||||||||| |||||| |||||||||||||||||| |||| |||||| |||||||||||    
T  2844942 ttattttgcagcttatagcataagtgcttatcatgataagtgcttatgaataagctattt 2845001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 357 - 413
Target Start/End: Complemental strand, 42237547 - 42237490
Alignment:
Q  357 taagctattttttataacaaaagagaata-aaaggtaaattgttttcatataagctat 413  Q
    |||||| ||||||||||||||||| || | |||| |||||||||||||||||||||||    
T  42237547 taagctcttttttataacaaaagataaaataaagttaaattgttttcatataagctat 42237490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 31606189 - 31606237
Alignment:
Q  120 attcatctttcttctggaattgctggtttcactgctgcttattgggtaa 168  Q
    |||||||| ||||||||  |||| |||||||||||||||||||||||||    
T  31606189 attcatctatcttctggtgttgcaggtttcactgctgcttattgggtaa 31606237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 413
Target Start/End: Original strand, 10114397 - 10114491
Alignment:
Q  318 cttataacataagtgcttatcatgaaaagtccttatgtataagctattttttataacaaaagagaataaaaggtaaattgttttcatataagctat 413  Q
    |||||| |||||||| |||| |||| |||| ||||||||||||||| ||| |||| ||||||| || | ||| | |||||||||  ||||||||||    
T  10114397 cttatagcataagtggttatgatgataagtgcttatgtataagcta-tttctatagcaaaagataaaataagttgaattgttttggtataagctat 10114491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 368
Target Start/End: Complemental strand, 40859881 - 40859831
Alignment:
Q  318 cttataacataagtgcttatcatgaaaagtccttatgtataagctattttt 368  Q
    |||||| || ||||||||||||||| |||  ||||||||||||||||||||    
T  40859881 cttatagcacaagtgcttatcatgataagcgcttatgtataagctattttt 40859831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 311 - 366
Target Start/End: Original strand, 39105364 - 39105419
Alignment:
Q  311 tttgcatcttataacataagtgcttatcatgaaaagtccttatgtataagctattt 366  Q
    |||||| |||||| |||||||||||||||||| |||  ||||||||||||||||||    
T  39105364 tttgcagcttatagcataagtgcttatcatgataagcgcttatgtataagctattt 39105419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 311 - 410
Target Start/End: Complemental strand, 9202918 - 9202819
Alignment:
Q  311 tttgcatcttataacataagtgcttatcatgaaaagtccttatgtataagctattttttataacaaaagagaata-aaaggtaaattgttttcatataag 409  Q
    |||||| |||||| || ||||| ||||||||| |||| ||||| |||||||||||| |  || ||||||| || | |||| |||||||||||||||||||    
T  9202918 tttgcagcttatagcacaagtgtttatcatgataagtgcttatatataagctatttctg-tagcaaaagataaaataaagttaaattgttttcatataag 9202820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 368
Target Start/End: Original strand, 28776875 - 28776932
Alignment:
Q  311 tttgcatcttataacataagtgcttatcatgaaaagtccttatgtataagctattttt 368  Q
    |||||| |||||| | ||||  |||||||||| |||| ||||||||||||||||||||    
T  28776875 tttgcagcttatagcctaagcacttatcatgataagtgcttatgtataagctattttt 28776932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 413
Target Start/End: Original strand, 29588813 - 29588881
Alignment:
Q  344 aagtccttatgtataagctattttttataacaaaagagaataaaaggtaaattgttttcatataagctat 413  Q
    |||| |||||||||||||||||| | ||||||||| | || | || | ||||||||||||||||||||||    
T  29588813 aagtgcttatgtataagctatttct-ataacaaaatataaaataatgaaaattgttttcatataagctat 29588881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 402
Target Start/End: Original strand, 11835173 - 11835268
Alignment:
Q  307 ttattttgcatcttataacataagtgcttatcatgaaaagtccttatgtataagctattttttataacaaaagagaata-aaaggtaaattgttttc 402  Q
    ||||||||||  | |||||||||  ||||||||||| ||||  |||||||||| | | |||||||||||||||| || | |||| ||||||||||||    
T  11835173 ttattttgcaattcataacataaacgcttatcatgataagtgtttatgtataaacca-tttttataacaaaagataaaataaagttaaattgttttc 11835268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 366
Target Start/End: Complemental strand, 20982297 - 20982250
Alignment:
Q  318 cttataacataagtgcttatcatgaaaagtccttatgtataagctattt 366  Q
    |||||| |||||||||||||||| | |||| ||||||||||||||||||    
T  20982297 cttatagcataagtgcttatcat-ataagtgcttatgtataagctattt 20982250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 168
Target Start/End: Complemental strand, 13349918 - 13349844
Alignment:
Q  94 ttattgattattctggtggctatgttattcatctttcttctggaattgctggtttcactgctgcttattgggtaa 168  Q
    |||| ||||| |||||||| ||||| |||||| | ||||||||  ||||||| || |||||||||||||||||||    
T  13349918 ttatcgattactctggtggttatgtcattcatttgtcttctggggttgctgggtttactgctgcttattgggtaa 13349844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 366
Target Start/End: Original strand, 15942249 - 15942288
Alignment:
Q  327 taagtgcttatcatgaaaagtccttatgtataagctattt 366  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  15942249 taagtgcttatcatgataagtgcttatgtataagctattt 15942288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 367
Target Start/End: Original strand, 10744215 - 10744264
Alignment:
Q  318 cttataacataagtgcttatcatgaaaagtccttatgtataagctatttt 367  Q
    |||||| |||||| ||||||||||| |||| || ||||||||||||||||    
T  10744215 cttatagcataagcgcttatcatgacaagtgctaatgtataagctatttt 10744264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 366
Target Start/End: Complemental strand, 5894326 - 5894278
Alignment:
Q  318 cttataacataagtgcttatcatgaaaagtccttatgtataagctattt 366  Q
    |||||| || ||||||||||||||| |||  ||||||||||||||||||    
T  5894326 cttatagcacaagtgcttatcatgataagcgcttatgtataagctattt 5894278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 367
Target Start/End: Complemental strand, 47499013 - 47498957
Alignment:
Q  311 tttgcatcttataacataagtgcttatcatgaaaagtccttatgtataagctatttt 367  Q
    |||||| |||||| || ||||||||||||||| |||  ||| |||||||||||||||    
T  47499013 tttgcagcttatagcacaagtgcttatcatgataagcgcttgtgtataagctatttt 47498957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 366
Target Start/End: Original strand, 264271 - 264326
Alignment:
Q  311 tttgcatcttataacataagtgcttatcatgaaaagtccttatgtataagctattt 366  Q
    |||||| |||||| || ||||||||||||||| |||| ||||| ||||||||||||    
T  264271 tttgcagcttatagcacaagtgcttatcatgataagtgcttatatataagctattt 264326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 409
Target Start/End: Complemental strand, 402711 - 402614
Alignment:
Q  311 tttgcatcttataacataagtgcttatcatgaaaagtccttatgtataagctattttttataacaaaagagaataaaaggtaaattgttttcatataag 409  Q
    |||||| || ||| || ||||||||||||||| |||  ||||||||||||||| ||| ||||  |||||| ||| |||  |||||||||||| ||||||    
T  402711 tttgcagctcatagcacaagtgcttatcatgataagggcttatgtataagcta-tttctatagaaaaagataattaaatttaaattgttttcgtataag 402614  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 387
Target Start/End: Original strand, 23815953 - 23816028
Alignment:
Q  311 tttgcatcttataacataagtgcttatcatgaaaagtccttatgtataagctattttttataacaaaagagaataaa 387  Q
    ||||||||||||| |  ||||||||||||||| |||  |||||||||||| || ||| ||||| |||||| ||||||    
T  23815953 tttgcatcttatagccaaagtgcttatcatgataagcacttatgtataagtta-tttctataataaaagataataaa 23816028  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 413
Target Start/End: Complemental strand, 18962175 - 18962106
Alignment:
Q  344 aagtccttatgtataagctattttttataacaaaagagaata-aaaggtaaattgttttcatataagctat 413  Q
    |||| ||||||||| |||||||||| ||||||||||| || | |||| |||| ||||||||||||||||||    
T  18962175 aagtgcttatgtattagctattttt-ataacaaaagataaaataaagttaaactgttttcatataagctat 18962106  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 359
Target Start/End: Original strand, 36534696 - 36534736
Alignment:
Q  319 ttataacataagtgcttatcatgaaaagtccttatgtataa 359  Q
    |||||||||||||||||||||||| |||| ||| |||||||    
T  36534696 ttataacataagtgcttatcatgataagtgcttgtgtataa 36534736  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 380
Target Start/End: Original strand, 42826319 - 42826355
Alignment:
Q  344 aagtccttatgtataagctattttttataacaaaaga 380  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  42826319 aagtgcttatatataagctattttttataacaaaaga 42826355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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