View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1107_low_3 (Length: 828)
Name: NF1107_low_3
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 646; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 84 - 799
Target Start/End: Original strand, 21850790 - 21851502
Alignment:
| Q |
84 |
agcagagaggggtttggaagcatgaatcagggtttggcttgaacggagtttgtcacttgtcaaactagcaaacatggtggtttgcaggttgtgtcatagg |
183 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21850790 |
agcagagaggggtttggaagcatgaatcagggtttggcttgaacggagtttgtcacttgtcaaactagcaaacatggtggtttgcaggttgtgtcatagg |
21850889 |
T |
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| Q |
184 |
agtgatataagggtccctagatttgtctcatgaaacataagtgatcttgggaaatgaccgcctcccaggtatgccaccctaaccaagtgaagttgaagct |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21850890 |
agtgatataagggtccctagatttgtctcatgaaacataagtgatcttggggaatgaccgcctcccaggtatgccaccctaaccaagtgaagttgaagct |
21850989 |
T |
|
| Q |
284 |
gaattggggaatgacatcctcccaatgtcagaagacttcgtaagatctgaggtatcatgagacacaagtttgatggggattatttccttagaaacaatgt |
383 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21850990 |
gaattggggaatgacatcatcccaatgtcagaagacttcgtaagatctgaggtatcatgagacacaagtttgatggggattatttccttagaaacaatgt |
21851089 |
T |
|
| Q |
384 |
cctttaacctagtgttatgaatcaaagaaacttcttcaccataatgagcattgagtggctcaatatcagctaaaagcttgttaaaagagccatcaatatc |
483 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21851090 |
cctttaacctagtgttatgaatcaaagaaacttcttcaccataatgagcattgagtggctcaatatcagctaaaagcttgttaaaagagccatcaatatc |
21851189 |
T |
|
| Q |
484 |
tttcatatcatcaaccaaagcctctccttgcaccgtgtcaggttcagaattcaaaatggtgaaataattgtgcaggacaggatcttggtcttccaagaaa |
583 |
Q |
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|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
21851190 |
tttcat---atcaaccaaagcctctccttgcaccctgtcaggttcagaattcaaaatggtgaaataattgtgcaggacaagatcttggtcttccaagcaa |
21851286 |
T |
|
| Q |
584 |
tcatgtcctctaaactaaagttagcagggtcatatcgaatgttgtccataacattaaaagtagcatcactagctaggaaaagaggtatggtgtgaactat |
683 |
Q |
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|| ||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||| |
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| T |
21851287 |
tcctgtcctctaaactaaagttcgcatggtcatatcgattgttgtccataacattaaaagaaacatcactagctaggaaaagaggtatggtttgaactat |
21851386 |
T |
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| Q |
684 |
cagctgcaacaatgatggaaaaaggtgcatgcggaacagtttccgctggatcttcacaggtatttatttgtaatgtagtctctaaatttgctatctaata |
783 |
Q |
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| T |
21851387 |
cagctgcaacaatgatggaaaaaggtgcatgcggaacagtttcagctggatcttcacaggtatttatttgtaatgtagtctctaaatttgctatctaaga |
21851486 |
T |
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| Q |
784 |
tctatttggtgcatct |
799 |
Q |
| |
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|||||||||||||||| |
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| T |
21851487 |
tctatttggtgcatct |
21851502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 153
Target Start/End: Original strand, 31163375 - 31163444
Alignment:
| Q |
84 |
agcagagaggggtttggaagcatgaatcagggtttggcttgaacggagtttgtcacttgtcaaactagca |
153 |
Q |
| |
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|||||| |||||||| |||||| ||| || ||||||| ||||| |||| ||||||||||||||||||||| |
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| T |
31163375 |
agcagaaaggggtttagaagcaggaaccaaggtttggtttgaagggagcttgtcacttgtcaaactagca |
31163444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 150
Target Start/End: Complemental strand, 51524691 - 51524634
Alignment:
| Q |
93 |
gggtttggaagcatgaatcagggtttggcttgaacggagtttgtcacttgtcaaacta |
150 |
Q |
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|||||||||| |||||| || | ||||||||||| |||| |||||||||||||||||| |
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| T |
51524691 |
gggtttggaaacatgaaccaagatttggcttgaagggagcttgtcacttgtcaaacta |
51524634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 275 - 322
Target Start/End: Original strand, 22970514 - 22970561
Alignment:
| Q |
275 |
gttgaagctgaattggggaatgacatcctcccaatgtcagaagacttc |
322 |
Q |
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| T |
22970514 |
gttgaagctgaactggggaatgacaccctcccagtgtcagaaaacttc |
22970561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 165
Target Start/End: Complemental strand, 39332187 - 39332106
Alignment:
| Q |
84 |
agcagagaggggtttggaagcatgaatcagggtttggcttgaacggagtttgtcacttgtcaaactagcaaacatggtggtt |
165 |
Q |
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|||||| ||||||||||||||| | |||| ||||||||||||| |||| |||||||| | || |||||||| |||||||| |
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| T |
39332187 |
agcagaaaggggtttggaagcagggatcaaggtttggcttgaagggagcttgtcactagataagctagcaaatctggtggtt |
39332106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 41035308 - 41035342
Alignment:
| Q |
116 |
tttggcttgaacggagtttgtcacttgtcaaacta |
150 |
Q |
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||||||||||| ||||||||||||||||||||||| |
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| T |
41035308 |
tttggcttgaagggagtttgtcacttgtcaaacta |
41035342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 8831556 - 8831593
Alignment:
| Q |
116 |
tttggcttgaacggagtttgtcacttgtcaaactagca |
153 |
Q |
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| T |
8831556 |
tttggcttgaagggagcttgtcacttgtcaaactagca |
8831593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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