View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1107_low_30 (Length: 449)
Name: NF1107_low_30
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 30264685 - 30264966
Alignment:
| Q |
1 |
tggttgcatgcacatgcacatgttaatatttgttatatgatagatatgtaaggaaatataaacactaaaacacataaaa-agtacgtactattatggagg |
99 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30264685 |
tggttgcatgcatatgcacatgttaatatttgttatatgataaatatgtaaggaaatataaacactaaaacacataaaaaagtacgtactattatggagg |
30264784 |
T |
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| Q |
100 |
agaagcgtggattgataggtaagaacaaatgttggatcaaatacatagcttgagagtcatcaattggaatttctaattccaaaaatccaaaaacatatga |
199 |
Q |
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| T |
30264785 |
agaagcgtggattgataggtaagaacaaatgttggatcaaatacatagcttgagagtcatcaattggaatttctaattccaaaaatccaaaaacatatga |
30264884 |
T |
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| Q |
200 |
acataggggaggggtgttgaagtattgtccacttggacttactggctcagttacatcttcaaagttgtccattgattatact |
281 |
Q |
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| T |
30264885 |
acataggggaggggtgttgaaatattgtccacttggacttactggctcagttagatcttcaaagttgtccattgattatact |
30264966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 30287503 - 30287222
Alignment:
| Q |
1 |
tggttgcatgcacatgcacatgttaatatttgttatatgatagatatgtaaggaaatataaacactaaaacacataaaaa-gtacgtactattatggagg |
99 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30287503 |
tggttgcatgcatatgcacatgttaatatttgttatatgataaatatgtaaggaaatataaacactaaaacacataaaaaagtacgtactattatggagg |
30287404 |
T |
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| Q |
100 |
agaagcgtggattgataggtaagaacaaatgttggatcaaatacatagcttgagagtcatcaattggaatttctaattccaaaaatccaaaaacatatga |
199 |
Q |
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| T |
30287403 |
agaagcgtggattgataggtaagaacaaatgttggatcaaatacatagcttgagagtcatcaattggaatttctaattccaaaaatccaaaaacatatga |
30287304 |
T |
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| Q |
200 |
acataggggaggggtgttgaagtattgtccacttggacttactggctcagttacatcttcaaagttgtccattgattatact |
281 |
Q |
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| T |
30287303 |
acataggggaggggtgttgaaatattgtccacttggacttactggctcagttagatcttcaaagttgtccattgattatact |
30287222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 85 - 272
Target Start/End: Original strand, 30271695 - 30271882
Alignment:
| Q |
85 |
gtactattatggaggagaagcgtggattgataggtaagaacaaatgttggatcaaatacatagcttgagagtcatcaattggaatttctaattccaaaaa |
184 |
Q |
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| T |
30271695 |
gtaccattatggaggagaaacgtggattgataggtaagaagacatgttggaacaaatacatagtttgagaatcatcaattggaatttgtgattccaaaaa |
30271794 |
T |
|
| Q |
185 |
tccaaaaacatatgaacataggggaggggtgttgaagtattgtccacttggacttactggctcagttacatcttcaaagttgtccatt |
272 |
Q |
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| T |
30271795 |
tccgaaaacatatgaacataggggtggtgtgttgaagtattgtccacttggacttactggctcggttacatattcaaagttgtccatt |
30271882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 85 - 281
Target Start/End: Complemental strand, 30280520 - 30280328
Alignment:
| Q |
85 |
gtactattatggaggagaagcgtggattgataggtaagaacaaatgttggatcaaatacatagcttgagagtcatcaattggaatttctaattccaaaaa |
184 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| || ||||| ||||||||| | ||||||||| || ||||||||||||||||| ||||| |
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| T |
30280520 |
gtaccattatggaggagaagcgtggattgataggtaagaa---attttggaacaaatacattgtttgagagtcgtccattggaatttctaattctaaaaa |
30280424 |
T |
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| Q |
185 |
tccaaaaacatatgaacataggggaggggtgttgaagtattgtccacttggacttactggctcagttacatcttcaaagttgtccattgattatact |
281 |
Q |
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||| ||| |||||||||||| ||| || || |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30280423 |
tccgaaa-catatgaacataagggtggtgtattgaagaattgtccacttggacttactggctcagttagatcttcaaagttgtccattgattatact |
30280328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 85 - 272
Target Start/End: Original strand, 30304736 - 30304920
Alignment:
| Q |
85 |
gtactattatggaggagaagcgtggattgataggtaagaacaaatgttggatcaaatacatagcttgagagtcatcaattggaatttctaattccaaaaa |
184 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| || ||||| ||||||||| | ||||||||| || ||||||||||||||||| ||||| |
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| T |
30304736 |
gtaccattatggaggagaagcgtggattgataggtaagaa---attttggaacaaatacattgtttgagagtcgtccattggaatttctaattctaaaaa |
30304832 |
T |
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| Q |
185 |
tccaaaaacatatgaacataggggaggggtgttgaagtattgtccacttggacttactggctcagttacatcttcaaagttgtccatt |
272 |
Q |
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| T |
30304833 |
tccgaaaacatatgaacataagggtggtgtattgaagaattgtccacttggacttactggctctgttacatcttcaaagttgtccatt |
30304920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 96 - 204
Target Start/End: Complemental strand, 30219893 - 30219785
Alignment:
| Q |
96 |
gaggagaagcgtggattgataggtaagaacaaatgttggatcaaatacatagcttgagagtcatcaattggaatttctaattccaaaaatccaaaaacat |
195 |
Q |
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|||||||| |||||||||||||| | ||| | || || | |||| ||||| ||| ||||||||||||||||| ||||||||| ||| |||||||||| |
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| T |
30219893 |
gaggagaaacgtggattgataggaaggaagacatctttaagcaaaggcatagtttgtgagtcatcaattggaatagctaattccagaaacccaaaaacat |
30219794 |
T |
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| Q |
196 |
atgaacata |
204 |
Q |
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||||||||| |
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| T |
30219793 |
atgaacata |
30219785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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