View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1107_low_32 (Length: 443)
Name: NF1107_low_32
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_low_32 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 97 - 443
Target Start/End: Complemental strand, 41226007 - 41225661
Alignment:
| Q |
97 |
actcacttgttttggagtccttctcggtgccgtttctgtccagttcagtattaggcattgctgaaattgccataacatcaggcgaagcgccgttgtaagc |
196 |
Q |
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| T |
41226007 |
actcacttgttttggagtccttctcggtgccgtttctgtccagttcagtattaggcattgctgaaattgccataacatcaggcaaagcgccgttgtaagc |
41225908 |
T |
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| Q |
197 |
aagcgacaactgaacaaaacctgctggtgaatggaatagatcagtcgaagaaagagagaactctttctctagttttccatctttcatcaatacatcggac |
296 |
Q |
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| T |
41225907 |
aagtgacaactgaacaaaacctgctggtgaatggaatagatcagtcgaagaaagagagaactctttctctagttttccatctttcatcaatacatcggac |
41225808 |
T |
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| Q |
297 |
aaaggtaccaaagcaaaaccaagtagttggtcttcaagataattcttcaccctgctaagcacccagctctcacattttttatccgaatctactttcctaa |
396 |
Q |
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| T |
41225807 |
aaaggtaccaaagcaaaaccaagtagttggtcttcaagataattcttcaccctgctaagcatccagatctcacatttgagagaagaatcgacggtcctaa |
41225708 |
T |
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| Q |
397 |
cacttatccgaagtttatcgttataaacgggatttcttcctcctcca |
443 |
Q |
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| T |
41225707 |
cacttagacgaaggttatcgttaaaaacgggatttcttcctcctcca |
41225661 |
T |
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Target: chr3 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 162 - 357
Target Start/End: Complemental strand, 22227795 - 22227600
Alignment:
| Q |
162 |
attgccataacatcaggcgaagcgccgttgtaagcaagcgacaactgaacaaaacctgctggtgaatggaatagatcagtcgaagaaagagagaactctt |
261 |
Q |
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||||||||||||||||| | ||| ||| ||||||||| ||||| ||||||||||||| || ||||| || |||||||| ||||||||||| ||||||| |
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| T |
22227795 |
attgccataacatcaggtgtagcaccggtgtaagcaatggacaattgaacaaaacctgaaggagaatgaaacagatcagttgaagaaagagaaaactctt |
22227696 |
T |
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| Q |
262 |
tctctagttttccatctttcatcaatacatcggacaaaggtaccaaagcaaaaccaagtagttggtcttcaagataattcttcaccctgctaagca |
357 |
Q |
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|||||||||| |||| | | | ||| || ||||| || ||||||||||||||||| | || ||||||||||||||||||||||||||||||| |
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| T |
22227695 |
tctctagtttaccattctggactagtacttctgacaacggcaccaaagcaaaaccaagcaactgatcttcaagataattcttcaccctgctaagca |
22227600 |
T |
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