View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1107_low_34 (Length: 437)
Name: NF1107_low_34
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_low_34 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 101; Significance: 7e-50; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 21 - 353
Target Start/End: Original strand, 10058086 - 10058416
Alignment:
| Q |
21 |
attgcgccgaaaagtttcgccgaaaacagagatg-tgcatcggagatggaaacagagggaagaaaaccaaatcagagaagaaatcaaaaccaaatcgcaa |
119 |
Q |
| |
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||||||||| |||||| ||||| ||| |||| || ||| ||| ||||| |||| |||||| |||| |||||||||| |||||||||||||||||| |||| |
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| T |
10058086 |
attgcgccggaaagttccgccggaaatagaggtggtgcgtcgaagatgaaaacggagggaggaaa-ccaaatcagaaaagaaatcaaaaccaaattgcaa |
10058184 |
T |
|
| Q |
120 |
aatcaaccatagctctatgataccatgttaacataggcaatct---aacatagcattatgagggaagaagagaaacagtac--acagagaagaggaagaa |
214 |
Q |
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||||||||||||||| ||||||||||||||||||| |||||| | |||||||||| || ||| ||||||||| || || ||| |||| |||||| |
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| T |
10058185 |
gatcaaccatagctctgtgataccatgttaacatagacaatctagcagcatagcattagga-ggaggaagagaaagagcactaacatagaa---gaagaa |
10058280 |
T |
|
| Q |
215 |
cccgtaag-aggctagggtttgattaaccaaaatga-aagcataatatgtacaaggttatacaagagagatatatatactatagaatagaaaaggtctaa |
312 |
Q |
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|||||||| |||||||||||| |||||| ||| ||| ||| || |||||||| |||||||| | |||||||||||||||||| | || |||||| |
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| T |
10058281 |
cccgtaagaaggctagggtttcattaacaaaagtgagcagc-tactatgtacatagttataca----acatatatatactatagaatgggaattgtctaa |
10058375 |
T |
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| Q |
313 |
agtacccttactactaactaataataacaataatatctaac |
353 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| |
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| T |
10058376 |
agtacccttactactaactaataataacaattatatctaac |
10058416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 21 - 233
Target Start/End: Complemental strand, 46818199 - 46817989
Alignment:
| Q |
21 |
attgcgccgaaaagtttcgccgaaaacagagatg-tgcatcggagatggaaacagagggaagaaaaccaaatcagagaagaaatcaaaaccaaatcgcaa |
119 |
Q |
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| T |
46818199 |
attgcgccggaaagttccgccggaaacagaggtggtgcgtcggagatgaaaacgaagggaggaaa-ccaaatcagaaaagaaatcaaaaccaaattgcaa |
46818101 |
T |
|
| Q |
120 |
aatcaaccatagctctatgataccatgttaacataggcaatcta---acatagcattatgagggaagaagagaaacagtacacagagaagaggaagaacc |
216 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| |||||||||| || ||||||||||||| || ||| ||||| |||||||| |
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| T |
46818100 |
gatcaaccatagctctatgataccatgttaacatagacaatctagctgcatagcattagga-ggaagaagagaaagag--cactgagaa---gaagaacc |
46818007 |
T |
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| Q |
217 |
cgtaag-aggctagggtt |
233 |
Q |
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|||||| ||||||||||| |
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| T |
46818006 |
cgtaagaaggctagggtt |
46817989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 209 - 355
Target Start/End: Original strand, 10051254 - 10051397
Alignment:
| Q |
209 |
gaagaacccgtaaga-ggctagggtttgattaaccaaaatgaaagcataatatgtacaaggttatacaagagagatatatatactatagaatagaaaagg |
307 |
Q |
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||||||||||||||| ||||||||||| |||||| ||| |||| || | |||||| ||||||||| | ||||||||||||||||| | || | |
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| T |
10051254 |
gaagaacccgtaagaaggctagggtttcattaacaaaagtgaacaactactctgtacatagttatacaaca----tatatatactatagaatgggaattg |
10051349 |
T |
|
| Q |
308 |
tctaaagtacccttactactaactaataataacaataatatctaacat |
355 |
Q |
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||||||||||||||| |||||||||||||| ||||| ||||||||||| |
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| T |
10051350 |
tctaaagtacccttattactaactaataatcacaattatatctaacat |
10051397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 282 - 339
Target Start/End: Complemental strand, 46817940 - 46817883
Alignment:
| Q |
282 |
atatatatactatagaatagaaaaggtctaaagtacccttactactaactaataataa |
339 |
Q |
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|||||||||||||||||| | || ||||||||||||||||||||||||||||||||| |
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| T |
46817940 |
atatatatactatagaatgggaattgtctaaagtacccttactactaactaataataa |
46817883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 282 - 339
Target Start/End: Complemental strand, 46822550 - 46822493
Alignment:
| Q |
282 |
atatatatactatagaatagaaaaggtctaaagtacccttactactaactaataataa |
339 |
Q |
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|||||||||||||||||| | || ||||||||||||||||||||||||||||||||| |
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| T |
46822550 |
atatatatactatagaatgggaattgtctaaagtacccttactactaactaataataa |
46822493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 420
Target Start/End: Complemental strand, 21509581 - 21509519
Alignment:
| Q |
358 |
tcattaagatggaagtcgttaagattataatcatccttcatagctttacttatgaaacgcaat |
420 |
Q |
| |
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||||||||| |||||| || |||||||||||| |||| || ||||||||||||||| ||||| |
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| T |
21509581 |
tcattaagactgaagtcattgagattataatcacccttgattgctttacttatgaaatgcaat |
21509519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 21 - 163
Target Start/End: Original strand, 47633969 - 47634109
Alignment:
| Q |
21 |
attgcgccgaaaagtttcgccgaaaacagagatg-tgcatcggagatggaaacagagggaagaaaaccaaatcagagaagaaatcaaaaccaaatcgcaa |
119 |
Q |
| |
|
||||||||| |||||| ||||| |||||||| || ||| ||||||||| |||| |||||| |||| |||||||||| |||||||||||||||||| |||| |
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| T |
47633969 |
attgcgccggaaagttccgccggaaacagaggtggtgcgtcggagatgaaaacggagggaggaaa-ccaaatcagaaaagaaatcaaaaccaaattgcaa |
47634067 |
T |
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| Q |
120 |
aatcaaccatagctctatgataccatgttaacataggcaatcta |
163 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
47634068 |
gatcaaccatagctc--tgataccatgttaacatagacaatcta |
47634109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 21 - 339
Target Start/End: Original strand, 47940492 - 47940808
Alignment:
| Q |
21 |
attgcgccgaaaagtttcgccgaaaacagagatg-tgcatcggagatggaaacagagggaagaaaaccaaatcagagaagaaatcaaaaccaaatcgcaa |
119 |
Q |
| |
|
||||||||| |||||| ||||| |||||||| || || ||||||||| |||| ||||| |||| |||||||| | |||||||||||||||||| |||| |
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| T |
47940492 |
attgcgccggaaagttccgccggaaacagaggtggtgtgtcggagatgaaaacgaagggaggaaa-ccaaatcaaaaaagaaatcaaaaccaaattgcaa |
47940590 |
T |
|
| Q |
120 |
aatcaaccatagctctatgataccatgttaacataggcaatct---aacatagcattatgagggaagaagagaaacagtac--acagagaagaggaagaa |
214 |
Q |
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|||||||| ||||| ||||||||||||||||||| |||||| | |||||||||| || ||||||||||||| || || |||||||| |||||| |
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| T |
47940591 |
gatcaaccacagctc--tgataccatgttaacatagacaatctagcagcatagcattagga-ggaagaagagaaagagcactgacagagaa---gaagaa |
47940684 |
T |
|
| Q |
215 |
cccgtaag-aggctagggtttgattaaccaaaatg---aaagcataatatgtacaaggttatacaagagagatatatatactatagaatagaaaaggtct |
310 |
Q |
| |
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|||||||| ||||||||| || |||||| | || ||| ||| |||||| |||||||| | |||||||||||||||||| | || |||| |
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| T |
47940685 |
cccgtaagaaggctaggg-ttcattaacaattgtgaacaaaaactaacctgtacatagttataca----acatatatatactatagaatgggaattgtct |
47940779 |
T |
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| Q |
311 |
aaagtacccttactactaactaataataa |
339 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
47940780 |
aaagtacccttactactaactaataataa |
47940808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 282 - 354
Target Start/End: Original strand, 47634180 - 47634252
Alignment:
| Q |
282 |
atatatatactatagaatagaaaaggtctaaagtacccttactactaactaataataacaataatatctaaca |
354 |
Q |
| |
|
|||||||||||||||||| || |||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
47634180 |
atatatatactatagaatgagaattgtctaaagcacccttattactaactaataataacaataatatctaaca |
47634252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 282 - 339
Target Start/End: Original strand, 47936144 - 47936201
Alignment:
| Q |
282 |
atatatatactatagaatagaaaaggtctaaagtacccttactactaactaataataa |
339 |
Q |
| |
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|||||||||||||||||| | || ||||||||||||||||||||||||||||||||| |
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| T |
47936144 |
atatatatactatagaatgggaattgtctaaagtacccttactactaactaataataa |
47936201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 437
Target Start/End: Complemental strand, 5651419 - 5651385
Alignment:
| Q |
403 |
ttacttatgaaacgcaattacttggtaaagcatat |
437 |
Q |
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|||||||||||||||||||||||||| |||||||| |
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| T |
5651419 |
ttacttatgaaacgcaattacttggtcaagcatat |
5651385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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