View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1107_low_42 (Length: 417)

Name: NF1107_low_42
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1107_low_42
NF1107_low_42
[»] chr5 (9 HSPs)
chr5 (30-409)||(14377819-14378198)
chr5 (30-297)||(14237028-14237301)
chr5 (30-285)||(41434905-41435168)
chr5 (30-180)||(41441984-41442134)
chr5 (30-180)||(41448195-41448345)
chr5 (297-409)||(14237328-14237440)
chr5 (304-409)||(41442310-41442415)
chr5 (333-409)||(41448457-41448533)
chr5 (351-409)||(41435258-41435316)
[»] chr8 (2 HSPs)
chr8 (33-158)||(32117794-32117922)
chr8 (304-409)||(32118060-32118163)
[»] chr3 (6 HSPs)
chr3 (30-175)||(22744338-22744483)
chr3 (30-175)||(22666022-22666167)
chr3 (30-175)||(22722913-22723058)
chr3 (30-171)||(22746104-22746245)
chr3 (357-409)||(22666813-22666865)
chr3 (357-409)||(22723452-22723504)


Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 30 - 409
Target Start/End: Complemental strand, 14378198 - 14377819
Alignment:
Q  30 tttgctgaatcaaattatctgtagctgtatcaactgatgcagttgcttcatcaaggaccaaaatcttgctcttcttaagtagaaccctaccaaggcaaac 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14378198 tttgctgaatcaaattatctgtagctgtatcaactgatgcagttgcttcatcaaggaccaaaatcttgctcttcttaagtagaaccctaccaaggcaaac 14378099  T
Q  130 caactgcctctgacccatgctccaattctcaccattctcactaactataaatcatcaacttcgacattagaaaagtaagtagaaatactatataatccat 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  14378098 caactgcctctgacccatgctccaattctcaccattctcactaactataaatcatcaacttccacattagaaaagtaagtagaaatactatataattcat 14377999  T
Q  230 ctgaacttaaatatagcaatactatatatcagttggtctaaatttactatatactccctttggacgtatagatgtacccttttgcttatatttaagtctg 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14377998 ctgaacttaaatatagcaatactatatatcagttggtctaaatttactatatactccctttggacgtatagatgtacccttttgcttatatttaagtctg 14377899  T
Q  330 caaggagtatttatgttcaataaaattagaagacaaacctgaagagtcaagctttccttctttctttctaacttcatctc 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14377898 caaggagtatttatgttcaataaaattagaagacaaacctgaagagtcaagctttccttcattctttctaacttcatctc 14377819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 30 - 297
Target Start/End: Original strand, 14237028 - 14237301
Alignment:
Q  30 tttgctgaatcaaattatctgtagctgtatcaactgatgcagttgcttcatcaaggaccaaaatcttgctcttcttaagtagaaccctaccaaggcaaac 129  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  14237028 tttgctgaatcaaattatctgtagctgtatcaaccgaagcagttgcttcatcaagcaccaaaatcttgctcttcttaagcagaaccctaccaaggcaaac 14237127  T
Q  130 caactgcctctgacccatgctccaattctcaccattctcactaactataaatcatcaacttcgacattagaaa------agtaagtagaaatactatata 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||       || ||||||| |||||||||    
T  14237128 caactgcctctgacccatgctccaattctcaccattctcactaactataaatcatcaacttccacattagcaatatgttcgtgagtagaactactatata 14237227  T
Q  224 atccatctgaacttaaatatagcaatactatatatcagttggtctaaatttactatatactccctttggacgta 297  Q
    |||||| ||||||| |||||||||||| | || |||||||||||||||||||||| ||||||||| ||||||||    
T  14237228 atccatatgaacttgaatatagcaataatgtacatcagttggtctaaatttactacatactccctctggacgta 14237301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 30 - 285
Target Start/End: Original strand, 41434905 - 41435168
Alignment:
Q  30 tttgctgaatcaaattatctgtagctgtatcaactgatgcagttgcttcatcaaggaccaaaatcttgctcttcttaagtagaaccctaccaaggcaaac 129  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| | ||||||    
T  41434905 tttgctgaatcaaattatctgtagctgtatcaactgatgcagtggcttcatcaagcaccaaaatcttgctcttcttaagaagaaccctacctaagcaaac 41435004  T
Q  130 caactgcctctgacccatgctccaattctcaccattctcactaactat-aaatcatcaacttcgacattag-aaaag-----taagtagaaatactatat 222  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||  ||||||||| ||||||| || ||       ||||||||||||||||    
T  41435005 caactgcctttgacccatgctccaattctcaccattctcactaactataaaagaatcaacttccacattagcaataggttcaagagtagaaatactatat 41435104  T
Q  223 aatccatctgaacttaaatat-agcaatactatatatcagttggtctaaatttactatatactc 285  Q
    | ||| | || |||||| ||| ||||| |   || |||| ||||||||||||||||||||||||    
T  41435105 actccttatgcacttaagtatgagcaaaaaggtacatcatttggtctaaatttactatatactc 41435168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 30 - 180
Target Start/End: Original strand, 41441984 - 41442134
Alignment:
Q  30 tttgctgaatcaaattatctgtagctgtatcaactgatgcagttgcttcatcaaggaccaaaatcttgctcttcttaagtagaaccctaccaaggcaaac 129  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||||    
T  41441984 tttgctgaatcaaattatctgtagctgtatcaactgaagcagttgcttcgtcaagcaccaaaatcttgctcttcttaagcagaaccctacctaggcaaac 41442083  T
Q  130 caactgcctctgacccatgctccaattctcaccattctcactaactataaa 180  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  41442084 caactgtctctgacccatgctccagttctcaccattctcactaactataaa 41442134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 30 - 180
Target Start/End: Original strand, 41448195 - 41448345
Alignment:
Q  30 tttgctgaatcaaattatctgtagctgtatcaactgatgcagttgcttcatcaaggaccaaaatcttgctcttcttaagtagaaccctaccaaggcaaac 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| | ||||||    
T  41448195 tttgctgaatcaaattatctgtagctgtatcaactgatgcagttgcttcgtcaagcaccaaaatcttgctcttcttaagaagaaccctacctaagcaaac 41448294  T
Q  130 caactgcctctgacccatgctccaattctcaccattctcactaactataaa 180  Q
    ||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  41448295 caattgcctttgacccatgctccaattctcaccattctcactaactataaa 41448345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 297 - 409
Target Start/End: Original strand, 14237328 - 14237440
Alignment:
Q  297 atagatgtacccttttgcttatatttaagtctgcaaggagtatttatgttcaataaaattagaagacaaacctgaagagtcaagctttccttctttcttt 396  Q
    ||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14237328 atagatgtacctttttgcttatattaaagtcttcaaggagtatttatgttcaataaaattagaaaacaaacctgaagagtcaagctttccttctttcttt 14237427  T
Q  397 ctaacttcatctc 409  Q
    |||||||||||||    
T  14237428 ctaacttcatctc 14237440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 304 - 409
Target Start/End: Original strand, 41442310 - 41442415
Alignment:
Q  304 tacccttttgcttatatttaagtctgcaaggagtatttatgttcaataaaattagaagacaaacctgaagagtcaagctttccttctttctttctaactt 403  Q
    |||| ||||| |||||||||||||||   ||| | |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41442310 tacctttttgtttatatttaagtctgacgggattgtttatgtttaacaaaattagaagacaaacctgaagagtcaagctttccttctttctttcgaactt 41442409  T
Q  404 catctc 409  Q
    | ||||    
T  41442410 cctctc 41442415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 333 - 409
Target Start/End: Original strand, 41448457 - 41448533
Alignment:
Q  333 ggagtatttatgttcaataaaattagaagacaaacctgaagagtcaagctttccttctttctttctaacttcatctc 409  Q
    ||||| ||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  41448457 ggagtgtttgtgttcaacaaaattagaatacaaacctgaagagtcaagctttccttctttctttcgaacttcatctc 41448533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 351 - 409
Target Start/End: Original strand, 41435258 - 41435316
Alignment:
Q  351 aaaattagaagacaaacctgaagagtcaagctttccttctttctttctaacttcatctc 409  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||    
T  41435258 aaaattagaatacaaacctgaagagtcaagctttccttctttctttcgaacttcgtctc 41435316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 33 - 158
Target Start/End: Original strand, 32117794 - 32117922
Alignment:
Q  33 gctgaatcaaattatctgtagctgtatcaactgatgcagttgcttcatcaaggaccaaaa---tcttgctcttcttaagtagaaccctaccaaggcaaac 129  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||   |||||||||||||||| ||||||||||| ||| ||||    
T  32117794 gctgaaacaaattatctgtagctgtatcaactgatgcagtggcttcatcaagcaccaaaatcttcttgctcttcttaagcagaaccctacctaggaaaac 32117893  T
Q  130 caactgcctctgacccatgctccaattct 158  Q
     | ||||||||||||||||||||||||||    
T  32117894 tatctgcctctgacccatgctccaattct 32117922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 304 - 409
Target Start/End: Original strand, 32118060 - 32118163
Alignment:
Q  304 tacccttttgcttatatttaagtctgcaaggagtatttatgttcaataaaattagaagacaaacctgaagagtcaagctttccttctttctttctaactt 403  Q
    |||| ||||||||||||||| |||||    |||||||||| |||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||    
T  32118060 tacctttttgcttatatttatgtctgaggagagtatttatattcaataaaatt-gaaggcaa-cctgaagagtcaagctttccttctttctttctaactt 32118157  T
Q  404 catctc 409  Q
    ||||||    
T  32118158 catctc 32118163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 30 - 175
Target Start/End: Complemental strand, 22744483 - 22744338
Alignment:
Q  30 tttgctgaatcaaattatctgtagctgtatcaactgatgcagttgcttcatcaaggaccaaaatcttgctcttcttaagtagaaccctaccaaggcaaac 129  Q
    |||| ||||| | ||||||||||||||| |||||||||||||| ||||||||||| |||||||| ||||| |||||||| ||||| | ||| ||||| ||    
T  22744483 tttgttgaataatattatctgtagctgtgtcaactgatgcagtagcttcatcaagaaccaaaattttgcttttcttaaggagaacacgaccgaggcacac 22744384  T
Q  130 caactgcctctgacccatgctccaattctcaccattctcactaact 175  Q
    ||||||||| ||||||||||||||||| || ||||||||| |||||    
T  22744383 caactgcctttgacccatgctccaattttctccattctcagtaact 22744338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 30 - 175
Target Start/End: Original strand, 22666022 - 22666167
Alignment:
Q  30 tttgctgaatcaaattatctgtagctgtatcaactgatgcagttgcttcatcaaggaccaaaatcttgctcttcttaagtagaaccctaccaaggcaaac 129  Q
    |||||||||| | ||||||||| || |||||||||||||||||||||||||| || ||||| |||||||| |||||||||||||| |  || ||||| ||    
T  22666022 tttgctgaataatattatctgttgccgtatcaactgatgcagttgcttcatcgagcaccaagatcttgcttttcttaagtagaacacgtccgaggcagac 22666121  T
Q  130 caactgcctctgacccatgctccaattctcaccattctcactaact 175  Q
    |||||| | |||||||||||||||||| || ||||||||| |||||    
T  22666122 caactgtcgctgacccatgctccaattttctccattctcagtaact 22666167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 30 - 175
Target Start/End: Original strand, 22722913 - 22723058
Alignment:
Q  30 tttgctgaatcaaattatctgtagctgtatcaactgatgcagttgcttcatcaaggaccaaaatcttgctcttcttaagtagaaccctaccaaggcaaac 129  Q
    |||||||||| | ||||||||| || |||||||||||||||||||||||||| || ||||| |||||||| |||||||||||||| |  || ||||| ||    
T  22722913 tttgctgaataatattatctgttgccgtatcaactgatgcagttgcttcatcgagcaccaagatcttgcttttcttaagtagaacacgtccgaggcagac 22723012  T
Q  130 caactgcctctgacccatgctccaattctcaccattctcactaact 175  Q
    |||||| || || |||||||||||||| || ||||||||| |||||    
T  22723013 caactgtctttgccccatgctccaattttctccattctcagtaact 22723058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 30 - 171
Target Start/End: Original strand, 22746104 - 22746245
Alignment:
Q  30 tttgctgaatcaaattatctgtagctgtatcaactgatgcagttgcttcatcaaggaccaaaatcttgctcttcttaagtagaaccctaccaaggcaaac 129  Q
    ||||||| ||||||||||| ||||| || |||||||||||||| |||||||| || ||||| |  ||  | |||||||| |  || |||||||| || ||    
T  22746104 tttgctgtatcaaattatcggtagccgtgtcaactgatgcagtggcttcatctagaaccaagactttatttttcttaagcaacactctaccaagacagac 22746203  T
Q  130 caactgcctctgacccatgctccaattctcaccattctcact 171  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  22746204 caactgcctctgacccatactccaattctcaccattctcact 22746245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 409
Target Start/End: Original strand, 22666813 - 22666865
Alignment:
Q  357 agaagacaaacctgaagagtcaagctttccttctttctttctaacttcatctc 409  Q
    ||||| |||||||| |||||||||||||||||||||||| || ||||||||||    
T  22666813 agaagtcaaacctgtagagtcaagctttccttctttcttcctcacttcatctc 22666865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 409
Target Start/End: Original strand, 22723452 - 22723504
Alignment:
Q  357 agaagacaaacctgaagagtcaagctttccttctttctttctaacttcatctc 409  Q
    ||||| |||||||| |||||||||||||||||||||||| || ||||||||||    
T  22723452 agaagtcaaacctgtagagtcaagctttccttctttcttcctcacttcatctc 22723504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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