View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1107_low_43 (Length: 414)
Name: NF1107_low_43
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 33 - 400
Target Start/End: Complemental strand, 48671587 - 48671220
Alignment:
| Q |
33 |
ggctccaaagattccctcctatcctagtttataccactttataaaagaaaaactaaaccacacaaaatcaaacattaatctgatccaaattcacttcctt |
132 |
Q |
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| T |
48671587 |
ggctccaaggattccctcctatcctagtttataccactttataaaagaaaaactaaaccacacaaaatcaaacattaatctgatccaaattcacttcctt |
48671488 |
T |
|
| Q |
133 |
cacttttcataattcaaacaattcttcaaccaaccatgtcttcagaagacacagaaatcaaaccagaaattcatgtcctattggttgcgttttcagctca |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48671487 |
cacttttcataattcaaacaattcttcaaccaaccatgtcttcagaagacacagaaatcaaaccagaaattcatgtcctattggttgcgttttcagctca |
48671388 |
T |
|
| Q |
233 |
aggtcacataaaccctttacttagactaggcaaatccctattaaccaaaggccttaatgtcacacttgccaccactgaattagtttaccaccgtgtcttc |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48671387 |
aggtcacataaaccctttacttagactaggcaaatccctattaaccaaaggccttaatgtcacacttgccaccactgaattagtttaccaccgtgtcttc |
48671288 |
T |
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| Q |
333 |
aaatcaaccaccaccgacacggacaccgtcccaacttcttactccaccaatggaatcaacgtcctgtt |
400 |
Q |
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|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
48671287 |
aaatcaaccaccaccgacacagacaccgtcccaacctcttactccaccaatggaatcaacgtcctgtt |
48671220 |
T |
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