View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1107_low_46 (Length: 396)

Name: NF1107_low_46
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1107_low_46
NF1107_low_46
[»] chr8 (4 HSPs)
chr8 (19-188)||(40118442-40118613)
chr8 (95-189)||(38172423-38172517)
chr8 (281-333)||(40118298-40118350)
chr8 (114-186)||(32416056-32416128)
[»] scaffold0110 (2 HSPs)
scaffold0110 (95-189)||(6648-6742)
scaffold0110 (281-334)||(6834-6887)
[»] chr7 (2 HSPs)
chr7 (95-189)||(34659704-34659798)
chr7 (105-183)||(28491689-28491767)
[»] chr4 (6 HSPs)
chr4 (95-189)||(52628636-52628730)
chr4 (95-189)||(856316-856408)
chr4 (283-333)||(54165765-54165815)
chr4 (95-186)||(17815619-17815710)
chr4 (95-158)||(54165603-54165666)
chr4 (284-333)||(21790996-21791045)
[»] chr1 (3 HSPs)
chr1 (97-189)||(33240495-33240589)
chr1 (101-186)||(29798698-29798783)
chr1 (105-224)||(30950455-30950574)
[»] chr5 (4 HSPs)
chr5 (101-186)||(40527803-40527888)
chr5 (97-186)||(22099349-22099430)
chr5 (282-333)||(40527978-40528029)
chr5 (95-145)||(34034386-34034436)
[»] chr3 (2 HSPs)
chr3 (105-224)||(40764144-40764263)
chr3 (101-186)||(20842828-20842912)
[»] chr2 (2 HSPs)
chr2 (119-186)||(42798815-42798882)
chr2 (105-183)||(16546805-16546883)
[»] chr6 (1 HSPs)
chr6 (105-183)||(1780308-1780386)


Alignment Details
Target: chr8 (Bit Score: 113; Significance: 4e-57; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 40118613 - 40118442
Alignment:
Q  19 acaaaacttagatgcagttgcagtgacgaagctagaaaaaagtttacgtagggaccaactatnnnnnnnntaaaa--ttaaagtatgtttttagcctcat 116  Q
    ||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||        |||||  ||||||||||||||||| |||||    
T  40118613 acaaaacttagatgcagttgcagcggcgaagctagcaaaaagtttacgtagggaccaactataaaaaaaataaaaaattaaagtatgtttttagtctcat 40118514  T
Q  117 atattataatttttaaggttgagtccttacaaacattttatgtcatttttgtctcgattttttaaaatttca 188  Q
    | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40118513 agattataatttttaaggtttagtccttacaaacattttatgtcatttttgtctcgattttttaaaatttca 40118442  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 95 - 189
Target Start/End: Original strand, 38172423 - 38172517
Alignment:
Q  95 taaagtatgtttttagcctcatatattataatttttaaggttgagtccttacaaacattttatgtcatttttgtctcgattttttaaaatttcac 189  Q
    |||||||||||||||| || ||| ||| |||||||||||||| |||||||| | ||||||||||  | |||||||||||||||||||||||||||    
T  38172423 taaagtatgtttttagtcttatagattgtaatttttaaggtttagtccttaaagacattttatgcaacttttgtctcgattttttaaaatttcac 38172517  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 40118350 - 40118298
Alignment:
Q  281 tgcaagtattgtagagactaaagacaaatttaatctgtaaattaaccaataca 333  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  40118350 tgcaagtattgtaaagactaaagacaaatttaatctgtaaattaaccaataca 40118298  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 186
Target Start/End: Complemental strand, 32416128 - 32416056
Alignment:
Q  114 catatattataatttttaaggttgagtccttacaaacattttatgtcatttttgtctcgattttttaaaattt 186  Q
    |||| |||||||||||| || || |||||||||||| | |||||   ||||||||||| ||||||||||||||    
T  32416128 catagattataattttttagatttagtccttacaaaaaatttattcaatttttgtctcaattttttaaaattt 32416056  T

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Target: scaffold0110 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 95 - 189
Target Start/End: Original strand, 6648 - 6742
Alignment:
Q  95 taaagtatgtttttagcctcatatattataatttttaaggttgagtccttacaaacattttatgtcatttttgtctcgattttttaaaatttcac 189  Q
    |||||||||||||||| |||||| ||| |||||||||||||| |||||||| | ||||||||||  |||||||||||||||||||||||||||||    
T  6648 taaagtatgtttttagtctcatagattgtaatttttaaggtttagtccttaaagacattttatgcaatttttgtctcgattttttaaaatttcac 6742  T

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Target: scaffold0110; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 281 - 334
Target Start/End: Original strand, 6834 - 6887
Alignment:
Q  281 tgcaagtattgtagagactaaagacaaatttaatctgtaaattaaccaatacag 334  Q
    |||||||||||||||||||||  ||||||||| |||| ||||||| ||||||||    
T  6834 tgcaagtattgtagagactaagaacaaatttagtctgcaaattaatcaatacag 6887  T

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Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 95 - 189
Target Start/End: Complemental strand, 34659798 - 34659704
Alignment:
Q  95 taaagtatgtttttagcctcatatattataatttttaaggttgagtccttacaaacattttatgtcatttttgtctcgattttttaaaatttcac 189  Q
    |||||||||||||||| |||||| |||||||||||||||||| |||||||||  ||||||||||  |||||||||||  ||||||||||||||||    
T  34659798 taaagtatgtttttagtctcatagattataatttttaaggtttagtccttacggacattttatgcaatttttgtctcagttttttaaaatttcac 34659704  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 183
Target Start/End: Complemental strand, 28491767 - 28491689
Alignment:
Q  105 ttttagcctcatatattataatttttaaggttgagtccttacaaacattttatgtcatttttgtctcgattttttaaaa 183  Q
    |||||| | |||| |||||||||||| ||||| |||||||||||| | |||||   ||||||||||| |||||| ||||    
T  28491767 ttttagtcccatagattataattttttaggtttagtccttacaaaaaatttattcaatttttgtctcaatttttaaaaa 28491689  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 95 - 189
Target Start/End: Complemental strand, 52628730 - 52628636
Alignment:
Q  95 taaagtatgtttttagcctcatatattataatttttaaggttgagtccttacaaacattttatgtcatttttgtctcgattttttaaaatttcac 189  Q
    |||||||||||||||| || ||| ||| |||||||||||||| |||||||| | ||||||||||  | |||||||||||||||||||||||||||    
T  52628730 taaagtatgtttttagtcttatagattgtaatttttaaggtttagtccttaaagacattttatgcaacttttgtctcgattttttaaaatttcac 52628636  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 95 - 189
Target Start/End: Original strand, 856316 - 856408
Alignment:
Q  95 taaagtatgtttttagcctcatatattataatttttaaggttgagtccttacaaacattttatgtcatttttgtctcgattttttaaaatttcac 189  Q
    |||||||||||||||| |||| ||  |||||||||||||||| |||||||||| |||||| |||  ||||||||||||||||||| |||||||||    
T  856316 taaagtatgtttttagtctcagat--tataatttttaaggtttagtccttacagacatttgatgcaatttttgtctcgatttttttaaatttcac 856408  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 54165765 - 54165815
Alignment:
Q  283 caagtattgtagagactaaagacaaatttaatctgtaaattaaccaataca 333  Q
    |||||||||||||||||||| |||||| |||  ||||||||||||||||||    
T  54165765 caagtattgtagagactaaaaacaaatgtaacttgtaaattaaccaataca 54165815  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 95 - 186
Target Start/End: Original strand, 17815619 - 17815710
Alignment:
Q  95 taaagtatgtttttagcctcatatattataatttttaaggttgagtccttacaaacattttatgtcatttttgtctcgattttttaaaattt 186  Q
    |||| |||||||||||||  ||| ||||||| |||| ||||| ||| ||| |||| |  ||||   ||||||||||||||||||||||||||    
T  17815619 taaaatatgtttttagccctataaattataactttttaggttaagttcttgcaaaaaaattattcaatttttgtctcgattttttaaaattt 17815710  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 95 - 158
Target Start/End: Original strand, 54165603 - 54165666
Alignment:
Q  95 taaagtatgtttttagcctcatatattataatttttaaggttgagtccttacaaacattttatg 158  Q
    |||||||||||||| | |||||| |||||| ||||||| ||| |||||||| | ||||||||||    
T  54165603 taaagtatgttttttgtctcatagattatactttttaaagtttagtccttatagacattttatg 54165666  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 333
Target Start/End: Complemental strand, 21791045 - 21790996
Alignment:
Q  284 aagtattgtagagactaaagacaaatttaatctgtaaattaaccaataca 333  Q
    |||| |||||||||||| | |||||||||||| | |||||||||||||||    
T  21791045 aagtgttgtagagactacaaacaaatttaatccgaaaattaaccaataca 21790996  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 97 - 189
Target Start/End: Original strand, 33240495 - 33240589
Alignment:
Q  97 aagtatgtttttagcctcatatattat--aatttttaaggttgagtccttacaaacattttatgtca-tttttgtctcgattttttaaaatttcac 189  Q
    |||||||||||||| |||||| |||||  ||||||||||||| ||| ||||||||| |||||||  | ||||||||||||||||||||||||||||    
T  33240495 aagtatgtttttagtctcataaattatgtaatttttaaggtttagttcttacaaac-ttttatgcaactttttgtctcgattttttaaaatttcac 33240589  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 186
Target Start/End: Original strand, 29798698 - 29798783
Alignment:
Q  101 atgtttttagcctcatatattataatttttaaggttgagtccttacaaacattttatgtcatttttgtctcgattttttaaaattt 186  Q
    |||||||||| |||||| ||||||  |||| ||||| |||||||||||| | |||||   ||||||||||||||||||||||||||    
T  29798698 atgtttttagtctcatagattatatatttttaggtttagtccttacaaaaagtttattcaatttttgtctcgattttttaaaattt 29798783  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 105 - 224
Target Start/End: Original strand, 30950455 - 30950574
Alignment:
Q  105 ttttagcctcatatattataatttttaaggttgagtccttacaaacattttatgtcatttttgtctcgattttttaaaatttcacnnnnnnnntgttttt 204  Q
    |||||| | |||| |||||||||||| ||||| |||||||||||| | |||||   ||||||||||| |||||| |||| || ||        |||||||    
T  30950455 ttttagtcccatagattataattttttaggtttagtccttacaaaaaatttattcaatttttgtctcaatttttaaaaaatttactaaaaaagtgttttt 30950554  T
Q  205 aatcttgcatttaatttcta 224  Q
    | ||||| ||||||||||||    
T  30950555 agtcttgtatttaatttcta 30950574  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 186
Target Start/End: Original strand, 40527803 - 40527888
Alignment:
Q  101 atgtttttagcctcatatattataatttttaaggttgagtccttacaaacattttatgtcatttttgtctcgattttttaaaattt 186  Q
    |||||||||| |||||| |||||| ||||| | ||| |||||||||||| | |||||   ||||||||||||||||||||||||||    
T  40527803 atgtttttagtctcataaattatatttttttaagtttagtccttacaaaaaatttattcaatttttgtctcgattttttaaaattt 40527888  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 186
Target Start/End: Complemental strand, 22099430 - 22099349
Alignment:
Q  97 aagtatgtttttagcctcatatattataatttttaaggttgagtccttacaaacattttatgtcatttttgtctcgattttttaaaattt 186  Q
    |||||||||||||| |||||| |||||||||||||||||| |||        ||||||| ||  ||||||||||| ||||||||||||||    
T  22099430 aagtatgtttttagtctcatagattataatttttaaggtttagt--------acattttgtgcaatttttgtctcaattttttaaaattt 22099349  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 282 - 333
Target Start/End: Original strand, 40527978 - 40528029
Alignment:
Q  282 gcaagtattgtagagactaaagacaaatttaatctgtaaattaaccaataca 333  Q
    |||||| ||||| |||||||| |||||||||||||| ||||||| |||||||    
T  40527978 gcaagtgttgtaaagactaaaaacaaatttaatctgaaaattaatcaataca 40528029  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 145
Target Start/End: Complemental strand, 34034436 - 34034386
Alignment:
Q  95 taaagtatgtttttagcctcatatattataatttttaaggttgagtcctta 145  Q
    |||||||| ||||||| |||||| |||||||||||| ||||| ||||||||    
T  34034436 taaagtatatttttagtctcataaattataattttttaggtttagtcctta 34034386  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 105 - 224
Target Start/End: Complemental strand, 40764263 - 40764144
Alignment:
Q  105 ttttagcctcatatattataatttttaaggttgagtccttacaaacattttatgtcatttttgtctcgattttttaaaatttcacnnnnnnnntgttttt 204  Q
    |||||| | |||| |||||||||||| ||||| |||||||||||| | |||||   ||||||||||| |||||| |||| || ||        |||||||    
T  40764263 ttttagtcccatagattataattttttaggtttagtccttacaaaaaatttattcaatttttgtctcaatttttaaaaaatttactaaaaaagtgttttt 40764164  T
Q  205 aatcttgcatttaatttcta 224  Q
    | ||||||||||||| ||||    
T  40764163 agtcttgcatttaatctcta 40764144  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 186
Target Start/End: Original strand, 20842828 - 20842912
Alignment:
Q  101 atgtttttagcctcatatattataatttttaaggttgagtccttacaaacattttatgtcatttttgtctcgattttttaaaattt 186  Q
    ||||||||||  ||||| ||||||||||||| |||| ||| |||| ||| |  ||||   ||||||||||||||||||||||||||    
T  20842828 atgtttttagtttcatagattataattttta-ggtttagttcttaaaaaaaaattattcaatttttgtctcgattttttaaaattt 20842912  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 42798815 - 42798882
Alignment:
Q  119 attataatttttaaggttgagtccttacaaacattttatgtcatttttgtctcgattttttaaaattt 186  Q
    |||||||||||| ||||| |||||||| ||| | |||||   ||||||||||||||| ||||||||||    
T  42798815 attataattttttaggtttagtccttataaaaaatttattcaatttttgtctcgattatttaaaattt 42798882  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 183
Target Start/End: Complemental strand, 16546883 - 16546805
Alignment:
Q  105 ttttagcctcatatattataatttttaaggttgagtccttacaaacattttatgtcatttttgtctcgattttttaaaa 183  Q
    |||||| | |||| |||||||||||| ||||| |||||||||||| | |||||   ||||||||||| |||||| ||||    
T  16546883 ttttagtcccatagattataattttttaggtttagtccttacaaaaaatttattcaatttttgtctcaatttttaaaaa 16546805  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 183
Target Start/End: Original strand, 1780308 - 1780386
Alignment:
Q  105 ttttagcctcatatattataatttttaaggttgagtccttacaaacattttatgtcatttttgtctcgattttttaaaa 183  Q
    |||||| | |||| |||||||||||| ||||| |||||||||||| | |||||   ||||||||||| |||||| ||||    
T  1780308 ttttagtcccatagattataattttttaggtttagtccttacaaaaaatttattcaatttttgtctcaatttttaaaaa 1780386  T

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