View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1107_low_51 (Length: 378)
Name: NF1107_low_51
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_low_51 |
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Alignment Details
Target: chr1 (Bit Score: 135; Significance: 3e-70; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 62 - 224
Target Start/End: Original strand, 4796893 - 4797054
Alignment:
| Q |
62 |
tttatgtgttaatatttgatttgtaatgttaactctcttgttgatagaaataatggaaatgatggagttatgttatcatatatgctacacactctgtttt |
161 |
Q |
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| T |
4796893 |
tttatgtgttaatgtttgatttgtaatgtta-ctctcttgttcatagaaataatggaaatgatggagttatgttatcatatatgctacacactctctttt |
4796991 |
T |
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| Q |
162 |
gagttctgcctccctcctttcatggattggatggaatcatttgtcacaatgaatatgacagca |
224 |
Q |
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| T |
4796992 |
gagttctgtctccctcctttcatggattggatggaatcatttgtgacaatgaatatgacagca |
4797054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 237 - 368
Target Start/End: Original strand, 4791734 - 4791865
Alignment:
| Q |
237 |
ctctggttcctttccagagtgtcgatccctcacatcatccattggatcaatccatcttccaacatcaacggggaattatttcttattcctatccttgtct |
336 |
Q |
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||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4791734 |
ctctggttcctttccagggtgtcggtccctcacatcatccattggatcaatccatcttccaacatcaacggggaattatttcttattcctatcctcgtct |
4791833 |
T |
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| Q |
337 |
tcatcattgaattccaccactcaatgcctttg |
368 |
Q |
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| T |
4791834 |
tcatcattgaagtccaccactcaatgcgtttg |
4791865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 107 - 224
Target Start/End: Complemental strand, 4788913 - 4788796
Alignment:
| Q |
107 |
agaaataatggaaatgatggagttatgttatcatatatgctacacactctgttttgagttctgcctccctcctttcatggattggatggaatcatttgtc |
206 |
Q |
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| T |
4788913 |
agaaacaatggaaatgatggagttatgttatcatatatgctacacactctgttttgagttctgtctccctcctttcatggattggatggaatcatttgtg |
4788814 |
T |
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| Q |
207 |
acaatgaatatgacagca |
224 |
Q |
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| T |
4788813 |
acaatgaatatgacagca |
4788796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 4791419 - 4791529
Alignment:
| Q |
114 |
atggaaatgatggagttatgttatcatatatgctacacactctgttttgagttctgcctccctcctttcatggattggatggaatcatttgtcacaatga |
213 |
Q |
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| T |
4791419 |
atggaaatgatggagttgtgttatcatatatgctacacactctgttttgagttctgtctccctcctttcatggattggatggaatcatttgtgacaatga |
4791518 |
T |
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| Q |
214 |
atatgacagca |
224 |
Q |
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||||||||||| |
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| T |
4791519 |
atatgacagca |
4791529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 235 - 335
Target Start/End: Original strand, 4797265 - 4797368
Alignment:
| Q |
235 |
gtctctggttcctttccagagtgtcg---atccctcacatcatccattggatcaatccatcttccaacatcaacggggaattatttcttattcctatcct |
331 |
Q |
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|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4797265 |
gtctctggttcctttctagagtgtcgtcgatccctcacatcatccattggatcaatccatcttccaacatcaacggggaattatttcttattcctatcct |
4797364 |
T |
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| Q |
332 |
tgtc |
335 |
Q |
| |
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|||| |
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| T |
4797365 |
tgtc |
4797368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 298
Target Start/End: Complemental strand, 4788572 - 4788530
Alignment:
| Q |
256 |
tgtcgatccctcacatcatccattggatcaatccatcttccaa |
298 |
Q |
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|||| ||||||| |||||||||||||||||| ||||||||||| |
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| T |
4788572 |
tgtccatccctcgcatcatccattggatcaacccatcttccaa |
4788530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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