View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1107_low_68 (Length: 356)
Name: NF1107_low_68
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_low_68 |
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Alignment Details
Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 27787518 - 27787639
Alignment:
| Q |
9 |
gaaaaatataaataaagttaaaataaagcttgaggtatatgtgattttgttttgtttacgaaaaatggttgttttctcctttaagccaaggttaagttga |
108 |
Q |
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| T |
27787518 |
gaaaattatgaataaagttaaaataaagctcgaggtatgtgtgattttgttttgtttacgaaaaatggttgttttctcatttaagccaaggttaagttga |
27787617 |
T |
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| Q |
109 |
atactcatacatgattttatct |
130 |
Q |
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| T |
27787618 |
atgctcatacatgattttatct |
27787639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 27790674 - 27790795
Alignment:
| Q |
9 |
gaaaaatataaataaagttaaaataaagcttgaggtatatgtgattttgttttgtttacgaaaaatggttgttttctcctttaagccaaggttaagttga |
108 |
Q |
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| T |
27790674 |
gaaaattatgaataaagttaaaataaagctcgaggtatgtgtgattttgttttgtttacgaaaaatggttgttttctcatttaagccaaggttaagttga |
27790773 |
T |
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| Q |
109 |
atactcatacatgattttatct |
130 |
Q |
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| T |
27790774 |
atgctcatacatgattttatct |
27790795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 27793806 - 27793927
Alignment:
| Q |
9 |
gaaaaatataaataaagttaaaataaagcttgaggtatatgtgattttgttttgtttacgaaaaatggttgttttctcctttaagccaaggttaagttga |
108 |
Q |
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| T |
27793806 |
gaaaattataaataaagttaaaataaagctcgaggtatatgtgattttgttttgcttacgaaaaatggttgttttctcatttaagccaaggttaagttga |
27793905 |
T |
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| Q |
109 |
atactcatacatgattttatct |
130 |
Q |
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| T |
27793906 |
atgctcatacatgactttatct |
27793927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 223 - 335
Target Start/End: Original strand, 27794550 - 27794662
Alignment:
| Q |
223 |
cttttgcttaaaatgtgacataccttgcgtttcgtgttagaacataaagaaaacaaaaacaaaacactagtttgaatgttgcaatgtgagtttatttaat |
322 |
Q |
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| T |
27794550 |
cttttgcttaaaatgtgacttgccatgtgttccgtgttagaacataaagcacataaaaataaaacactagtttgaatgttgcaatgtgagtttatttaat |
27794649 |
T |
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| Q |
323 |
atcttaatattga |
335 |
Q |
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| T |
27794650 |
atcttaatattga |
27794662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 256 - 321
Target Start/End: Original strand, 40764349 - 40764414
Alignment:
| Q |
256 |
gtgttagaacataaagaaaacaaaaacaaaacactagtttgaatgttgcaatgtgagtttatttaa |
321 |
Q |
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| T |
40764349 |
gtgttagaacataaagcacacaaaaacaaaacactagtttgaatgttgcactgtgagtttatttaa |
40764414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 40752001 - 40752095
Alignment:
| Q |
37 |
cttgaggtatatgtgattttgttttgtttacgaaaaatggttgttttctcctttaagccaaggttaag-ttgaatactcatacatgattttatct |
130 |
Q |
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| T |
40752001 |
cttgaggcatatgagattttgttttgtttacgaaaaatgattgtttgctcttttaagccaatgttaagctaaaatactcatacatgactttatct |
40752095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 256 - 335
Target Start/End: Original strand, 40752220 - 40752299
Alignment:
| Q |
256 |
gtgttagaacataaagaaaacaaaaacaaaacactagtttgaatgttgcaatgtgagtttatttaatatcttaatattga |
335 |
Q |
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| T |
40752220 |
gtgttagaacataaaccacgcaaaagcaaaacgctagtttaaatgttgcaatgttagtttatttaatatcttaatattga |
40752299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 40750980 - 40751060
Alignment:
| Q |
40 |
gaggtatatgtgattttgttttgtttacgaaaa-atggttgttttctcctttaagccaaggttaagttgaatactcataca |
119 |
Q |
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| T |
40750980 |
gaggcatatgtgattttgttttgcttatgaaaaaatggttgtttgctcatataagccaatgttaagctgaacactcataca |
40751060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 40764133 - 40764213
Alignment:
| Q |
40 |
gaggtatatgtgattttgttttgtttacgaaaa-atggttgttttctcctttaagccaaggttaagttgaatactcataca |
119 |
Q |
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|||| |||||||||||||||||||||| |||| |||||||||| ||| | |||||||| |||||| |||| ||||||||| |
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| T |
40764133 |
gagggatatgtgattttgttttgtttataaaaaaatggttgtttgctcatataagccaatgttaagctgaacactcataca |
40764213 |
T |
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