View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1107_low_74 (Length: 340)

Name: NF1107_low_74
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1107_low_74
NF1107_low_74
[»] chr7 (3 HSPs)
chr7 (48-286)||(28117712-28117963)
chr7 (177-249)||(7294115-7294187)
chr7 (9-37)||(28117979-28118007)
[»] chr4 (2 HSPs)
chr4 (294-334)||(9452967-9453007)
chr4 (258-286)||(1074464-1074492)
[»] chr1 (1 HSPs)
chr1 (294-334)||(46424154-46424194)
[»] chr3 (1 HSPs)
chr3 (203-254)||(9095167-9095218)
[»] chr6 (2 HSPs)
chr6 (177-249)||(1525263-1525335)
chr6 (177-241)||(2046808-2046872)
[»] chr2 (1 HSPs)
chr2 (258-286)||(34761188-34761216)


Alignment Details
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 48 - 286
Target Start/End: Complemental strand, 28117963 - 28117712
Alignment:
Q  48 aacaaaacctttatcgtgataaagtgatgtttaagatttttccattacaaaagaattagnnnnnnnn-------------atctagtaaaccatcacatt 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||                     | ||| ||||||||||||||    
T  28117963 aacaaaacctttatcgtgataaagtgatgtttaagatttttccataaaaaaagaattagtttttttatcgataattagtgaactattaaaccatcacatt 28117864  T
Q  135 tgtctatgcatttgtaagacaatcttaaattggtatacgaatttatgaatattttaaaaatgtatttaactctattaaaatgtcaagttagtttctatat 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28117863 tgtctatgcatttgtaagacaatcttaaattggtatacgaatttatgaatattttaaaaatgtatttaactctattaaaatgtcaagttagtttctatat 28117764  T
Q  235 ttaaccacttactataaactactctatatttaaccacttactatcaattaag 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28117763 ttaaccacttactataaactactctatatttaaccacttactatcaactaag 28117712  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 7294115 - 7294187
Alignment:
Q  177 ttatgaatattttaaaaatgtatttaactctattaaaatgtcaagttagtttctatatttaaccacttactat 249  Q
    |||| ||| ||||||||| || | | |||| |||||| |||||||||||||  |||||||||| |||||||||    
T  7294115 ttataaatgttttaaaaaggtctctgactcaattaaactgtcaagttagttcgtatatttaacaacttactat 7294187  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 37
Target Start/End: Complemental strand, 28118007 - 28117979
Alignment:
Q  9 caataatatattactagctacatgtatcc 37  Q
    |||||||||||||||||||||||||||||    
T  28118007 caataatatattactagctacatgtatcc 28117979  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 294 - 334
Target Start/End: Complemental strand, 9453007 - 9452967
Alignment:
Q  294 tgttgctcttttaagatgaagcggtgaattcattaaatata 334  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  9453007 tgttgctcttttaagatgaagcggtaaattcattaaatata 9452967  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 286
Target Start/End: Complemental strand, 1074492 - 1074464
Alignment:
Q  258 ctatatttaaccacttactatcaattaag 286  Q
    |||||||||||||||||||||||||||||    
T  1074492 ctatatttaaccacttactatcaattaag 1074464  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 294 - 334
Target Start/End: Complemental strand, 46424194 - 46424154
Alignment:
Q  294 tgttgctcttttaagatgaagcggtgaattcattaaatata 334  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  46424194 tgttgctcttttaagatgaagcgatgaattcattaaatata 46424154  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 203 - 254
Target Start/End: Complemental strand, 9095218 - 9095167
Alignment:
Q  203 actctattaaaatgtcaagttagtttctatatttaaccacttactataaact 254  Q
    ||||||||||| ||||||||| ||| ||||||||||||| ||||||| ||||    
T  9095218 actctattaaattgtcaagtttgttactatatttaaccatttactatcaact 9095167  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 1525335 - 1525263
Alignment:
Q  177 ttatgaatattttaaaaatgtatttaactctattaaaatgtcaagttagtttctatatttaaccacttactat 249  Q
    |||||||||| | ||||| || || |||||||||||| |||||| || || | || |||||||||||||||||    
T  1525335 ttatgaatatctcaaaaaagtcttgaactctattaaattgtcaaattggtctttaaatttaaccacttactat 1525263  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 2046872 - 2046808
Alignment:
Q  177 ttatgaatattttaaaaatgtatttaactctattaaaatgtcaagttagtttctatatttaacca 241  Q
    |||||| ||||||||||  || ||| |||||| |||| ||||||||| ||| |||||||||||||    
T  2046872 ttatgagtattttaaaacggtctttgactctaataaactgtcaagttggttgctatatttaacca 2046808  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 286
Target Start/End: Complemental strand, 34761216 - 34761188
Alignment:
Q  258 ctatatttaaccacttactatcaattaag 286  Q
    |||||||||||||||||||||||||||||    
T  34761216 ctatatttaaccacttactatcaattaag 34761188  T

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