View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1107_low_75 (Length: 336)
Name: NF1107_low_75
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_low_75 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 75 - 238
Target Start/End: Original strand, 33420057 - 33420220
Alignment:
| Q |
75 |
atctccaacaaaatcatgtttcataaacaagatcactatattagctttatcttgtttaagaataaatatgtatcatcaaacaatgatatctattaggtac |
174 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33420057 |
atctccaaataaatcatgtttcataaacaagatcactatattagctttatcttgtttaagaataaatatgtatcatcaaacaatgatatctattaggtac |
33420156 |
T |
|
| Q |
175 |
tcttcttcacccacatgcaacaaatgagacccttcttctatgatcttcaaaccagcctcgttcg |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33420157 |
tcttcttcacccacatgcaacaaatgagacccttcttctatgatcttcaaaccagcctcgttcg |
33420220 |
T |
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