View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1107_low_77 (Length: 332)
Name: NF1107_low_77
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_low_77 |
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| [»] scaffold0001 (1 HSPs) |
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| [»] scaffold0076 (1 HSPs) |
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Alignment Details
Target: scaffold0001 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 48 - 216
Target Start/End: Original strand, 133865 - 134033
Alignment:
| Q |
48 |
aattgtttagcgtcggcttggctgactctataaattttagttgactttttgttgttgactttagcatcgggtggccgactctattcaattttgttgacta |
147 |
Q |
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| T |
133865 |
aattgtttagcgtcggcttggctgactctataaattttagttgactttttgttgttgactttagcatcgggtggccgactctattaaattttgttgacta |
133964 |
T |
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| Q |
148 |
caaaaaggttgactttagagtctgccagtccgactctaagtgaattatttagtgtcggttcatctcact |
216 |
Q |
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| T |
133965 |
caaaaaggttgactttaaagtctgcctgtccgactccaagtgaattatttagcgtcggttcatctcact |
134033 |
T |
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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 216
Target Start/End: Complemental strand, 12286657 - 12286495
Alignment:
| Q |
53 |
tttagcgtcggcttggctgactctataaattttagttgactttttgttgttgactttagcatcgg-gtggccgactctattcaattttgttgactacaaa |
151 |
Q |
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| T |
12286657 |
tttagcgtcggccaggccgactcgataaattttagttggcttttcattgttgactttagcatgggtgtggccgactctataaaatttcgttgactac--c |
12286560 |
T |
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| Q |
152 |
aaggttgactttagagtctgccagtccgactctaagtgaattatttagtgtcggttcatctcact |
216 |
Q |
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| T |
12286559 |
tatgttgactttagaatttgcgtgttcgactctaaatgaaaaatttagcgtcggtttagctcact |
12286495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 185
Target Start/End: Original strand, 17825797 - 17825876
Alignment:
| Q |
107 |
tttagcatcgg-gtggccgactctattcaattttgttgactacaaaaaggttgactttagagtctgccagtccgactcta |
185 |
Q |
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| T |
17825797 |
tttagcatcggtgcggccgactctataaaattttgttgactacctaaatgttgactttagagtttgctagtccgactcta |
17825876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 207
Target Start/End: Original strand, 3741890 - 3741979
Alignment:
| Q |
118 |
gtggccgactctattcaattttgttgactacaaaaaggttgactttagagtctgccagtccgactctaagtgaattatttagtgtcggtt |
207 |
Q |
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| T |
3741890 |
gtggccaactctataaaatttcattgactactcaaatgttgactttagagtttgcacgtccgactctaactgaattatttagcgtcggtt |
3741979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 207
Target Start/End: Complemental strand, 9391505 - 9391435
Alignment:
| Q |
137 |
tttgttgactacaaaaaggttgactttagagtctgccagtccgactctaagtgaattatttagtgtcggtt |
207 |
Q |
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| T |
9391505 |
tttgttgactacttaaacgttgactttagagtttgtgtgtccgactctaaatgaatcatttagcgtcggtt |
9391435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 207
Target Start/End: Complemental strand, 13842330 - 13842257
Alignment:
| Q |
134 |
aattttgttgactacaaaaaggttgactttagagtctgccagtccgactctaagtgaattatttagtgtcggtt |
207 |
Q |
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| T |
13842330 |
aattttgttgactacttaaatgttgactatagagtttgctaatccaactctaagtgaataatttagcgtcggtt |
13842257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 17242145 - 17242029
Alignment:
| Q |
71 |
gactctataaattttagttgactttttgttgttgactttagcatcgg-gtggccgactctattcaattttgttgactacaaaaaggttgactttagagtc |
169 |
Q |
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| T |
17242145 |
gactctataacttttagttgacttttgaatattgacttaagcatcggtgtggccgactctataaaatttcattgactatttaaatgttgactttcgtgtt |
17242046 |
T |
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| Q |
170 |
tgccagtccgactctaa |
186 |
Q |
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| T |
17242045 |
tgcctatccgactctaa |
17242029 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 199
Target Start/End: Original strand, 6740085 - 6740168
Alignment:
| Q |
116 |
gggtggccgactctattcaattttgttgactacaaaaaggttgactttagagtctgccagtccgactctaagtgaattatttag |
199 |
Q |
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| T |
6740085 |
gggtgaccgactctttaaaaatttgttgactacttaaatgttgactttagagtttatcagtccgtctctaagtgtattatttag |
6740168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 216
Target Start/End: Complemental strand, 56822 - 56744
Alignment:
| Q |
138 |
ttgttgactacaaaaaggttgactttagagtctgccagtccgactctaagtgaattatttagtgtcggttcatctcact |
216 |
Q |
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| T |
56822 |
ttgttgactagttaaatgttgactttagagtttgacagtccgactctaactaaataatttagcgtcggttgagctcact |
56744 |
T |
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