View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1107_low_78 (Length: 332)
Name: NF1107_low_78
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_low_78 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 7e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 76 - 245
Target Start/End: Original strand, 50465548 - 50465724
Alignment:
| Q |
76 |
agagaggagaaaatggggtaagaaaatcaagattacaattgaaaatgttgtatagagttagtacttgatcgtgctagttgacttgtttgtgaatggctaa |
175 |
Q |
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| T |
50465548 |
agagaggagaaaatggggtaagaaaatcaagattacaattgaaaatgttgtatagagttagtacttgatcgtgctagttgacttgtttgtgaatggctaa |
50465647 |
T |
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| Q |
176 |
aaagaat-------tagtaatacacagttgcatatccattcttttatgtacatgcataatgcattacattctgtgat |
245 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50465648 |
aaagaattagtaagtagtaatacacagttgcatatccattcttttatgtacatgcataatgcattacattctgtgat |
50465724 |
T |
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