View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1107_low_80 (Length: 331)
Name: NF1107_low_80
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_low_80 |
 | |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 30264709 - 30264423
Alignment:
| Q |
1 |
taacatgtgcatgtgcatgcaaccatgtatataggtgagagataaagatggaaatatgaaatggaaaaaagtagaggttaatccaaaagatcattttaag |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30264709 |
taacatgtgcatatgcatgcaaccatgtatataggtgagagataaagatggaaatatgaaatggaaaaaagtagaggtaaatccaaaagatcattttaag |
30264610 |
T |
|
| Q |
101 |
gttccagtgttccctaaaaatgagtcaattgaattctatgatcatgattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30264609 |
gttccagtgttccctaaaaatgagtcaattgaattctatgatcaagattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaac |
30264510 |
T |
|
| Q |
201 |
ccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttgatgatg |
287 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30264509 |
ccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatg |
30264423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 30287479 - 30287765
Alignment:
| Q |
1 |
taacatgtgcatgtgcatgcaaccatgtatataggtgagagataaagatggaaatatgaaatggaaaaaagtagaggttaatccaaaagatcattttaag |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30287479 |
taacatgtgcatatgcatgcaaccatgtatataggtgagagataaagatggaaatatgaaatggaaaaaagtagaggtaaatccaaaagatcattttaag |
30287578 |
T |
|
| Q |
101 |
gttccagtgttccctaaaaatgagtcaattgaattctatgatcatgattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30287579 |
gttccagtgttccctaaaaatgagtcaattgaattctatgatcaagattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaac |
30287678 |
T |
|
| Q |
201 |
ccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttgatgatg |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30287679 |
ccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatg |
30287765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 28 - 244
Target Start/End: Complemental strand, 30271576 - 30271360
Alignment:
| Q |
28 |
tatataggtgagagataaagatggaaatatgaaatggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtca |
127 |
Q |
| |
|
||||||||||||||| |||||||| || |||||||||||||| |||||||| || || |||||||| | | |||||| | |||||||||| ||| ||| |
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|
| T |
30271576 |
tatataggtgagagacaaagatggcaaaatgaaatggaaaaaggtagaggtgaagcctgaagatcatatgcacgttccaatattccctaaaagtgaatca |
30271477 |
T |
|
| Q |
128 |
attgaattctatgatcatgattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagt |
227 |
Q |
| |
|
|||||||| |||||||| |||||||||| |||||||||||||| | || ||||| |||||| |||||||||| ||||||||||||||| | || || | |
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| T |
30271476 |
attgaattgtatgatcaatattttgatgattatgtgtcaaagattatgatggaaagaacaccacaagacaaaccactttgggaaatacatttaattaaat |
30271377 |
T |
|
| Q |
228 |
atccaacaagcaatgct |
244 |
Q |
| |
|
|||||||||| |||||| |
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| T |
30271376 |
atccaacaagaaatgct |
30271360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 28 - 244
Target Start/End: Original strand, 30280613 - 30280829
Alignment:
| Q |
28 |
tatataggtgagagataaagatggaaatatgaaatggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtca |
127 |
Q |
| |
|
|||||||||||||||| ||||||| || |||| ||||||||| |||||| || || |||||||| | ||||||||| | |||||||||| ||| ||| |
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| T |
30280613 |
tatataggtgagagatcaagatggcaaaatgatgtggaaaaaaatagaggcgaagcctgaagatcatatgaaggttccaatattccctaaaagtgaatca |
30280712 |
T |
|
| Q |
128 |
attgaattctatgatcatgattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagt |
227 |
Q |
| |
|
|||||||| |||||||| |||||||||| |||||||||||||| | || ||||| |||||| |||||||||| ||||||||||| ||| | || || | |
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| T |
30280713 |
attgaattgtatgatcaatattttgatgattatgtgtcaaagattatgatggaaagaacaccacaagacaaaccactttgggaaatgcatttaattaaat |
30280812 |
T |
|
| Q |
228 |
atccaacaagcaatgct |
244 |
Q |
| |
|
||||||||||||||||| |
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| T |
30280813 |
atccaacaagcaatgct |
30280829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 28 - 244
Target Start/End: Complemental strand, 30304643 - 30304427
Alignment:
| Q |
28 |
tatataggtgagagataaagatggaaatatgaaatggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtca |
127 |
Q |
| |
|
|||||||||||||||| ||||||| || |||| ||||||||| |||||| || || |||||||| | ||||||||| | |||||||||| ||| ||| |
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|
| T |
30304643 |
tatataggtgagagatcaagatggcaaaatgatgtggaaaaaaatagaggcgaagcctgaagatcatatgaaggttccaatattccctaaaagtgaatca |
30304544 |
T |
|
| Q |
128 |
attgaattctatgatcatgattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagt |
227 |
Q |
| |
|
|||||||| |||||||| |||||||||| |||||||||||||| | || ||||| |||||| |||||||||| ||||||||||| ||| | || || | |
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|
| T |
30304543 |
attgaattgtatgatcaatattttgatgattatgtgtcaaagattatgatggaaagaacaccacaagacaaaccactttgggaaatgcatttaattaaat |
30304444 |
T |
|
| Q |
228 |
atccaacaagcaatgct |
244 |
Q |
| |
|
||||||||||||||||| |
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| T |
30304443 |
atccaacaagcaatgct |
30304427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 185 - 287
Target Start/End: Complemental strand, 30048723 - 30048621
Alignment:
| Q |
185 |
acaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttgatg |
284 |
Q |
| |
|
|||||| |||| ||||| ||||||||||| ||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| || |
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|
| T |
30048723 |
acaccacaagataaaccactttgggaaattcatgttatcaattatccaacaaccaatgctgcttgcaccataatattcaaacttcatcatggacttggtg |
30048624 |
T |
|
| Q |
285 |
atg |
287 |
Q |
| |
|
||| |
|
|
| T |
30048623 |
atg |
30048621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 185 - 287
Target Start/End: Complemental strand, 30063064 - 30062962
Alignment:
| Q |
185 |
acaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttgatg |
284 |
Q |
| |
|
|||||| |||| ||||| ||||||||||| ||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| || |
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|
| T |
30063064 |
acaccacaagataaaccactttgggaaattcatgttatcaattatccaacaaccaatgctgcttgcaccataatattcaaacttcatcatggacttggtg |
30062965 |
T |
|
| Q |
285 |
atg |
287 |
Q |
| |
|
||| |
|
|
| T |
30062964 |
atg |
30062962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 179 - 281
Target Start/End: Complemental strand, 30032483 - 30032381
Alignment:
| Q |
179 |
gaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcac |
278 |
Q |
| |
|
||||| |||||| |||| ||||| ||||||||||| ||| ||||||| |||||||||| ||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
30032483 |
gaaagaacaccacaagataaaccactttgggaaattcatattatcaattatccaacaaccaatgaagcttgcaccataatattcaaacttcatcatgcac |
30032384 |
T |
|
| Q |
279 |
ttg |
281 |
Q |
| |
|
||| |
|
|
| T |
30032383 |
ttg |
30032381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 197 - 287
Target Start/End: Complemental strand, 30228850 - 30228760
Alignment:
| Q |
197 |
aaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttgatgatg |
287 |
Q |
| |
|
||||| ||||||||||| ||| ||||||| |||||||||| ||||||||||| ||||||||||||||||||| |||||||||||| ||||| |
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|
| T |
30228850 |
aaaccactttgggaaattcatattatcaattatccaacaaccaatgctgcttgcaccataatattcaaacttaatcatgcacttggtgatg |
30228760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 30220209 - 30220261
Alignment:
| Q |
192 |
aagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgct |
244 |
Q |
| |
|
|||| ||||||||||||||||| ||| | || || |||||||||||||||||| |
|
|
| T |
30220209 |
aagataaacccctttgggaaattcatttgattaaatatccaacaagcaatgct |
30220261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 281
Target Start/End: Complemental strand, 79679 - 79601
Alignment:
| Q |
203 |
ctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttg |
281 |
Q |
| |
|
|||||||| |||||| |||| || |||||||||| ||||| ||| ||| || |||||||||||||||||||||||| |
|
|
| T |
79679 |
ctttgggagatacatattattaaatatccaacaaaaaatgcagctggtaccttagtattcaaacttcatcatgcacttg |
79601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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