View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1107_low_87 (Length: 315)
Name: NF1107_low_87
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_low_87 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 16 - 271
Target Start/End: Complemental strand, 12321224 - 12320972
Alignment:
| Q |
16 |
attgacaggtctactttcttttttgactatttcttttctcatcctactgatttcttgcacgccctacaaattttggattaatataatctgaaaacgtaaa |
115 |
Q |
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| T |
12321224 |
attgacaggtctactttcatttttgactatttcttttttca-cctactgatttcttgcacgcgctagaaattttgaatta-tataatccaaaaacgtaaa |
12321127 |
T |
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| Q |
116 |
acacttaagaaaaacttctataacactccattttttaggattttataatctgaacagagcatacgagaagattgaaaggcgaaaaaagtaacagtcttat |
215 |
Q |
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| T |
12321126 |
acacttgagaaaaacttctataacactccattttttcggattttataatctgaatagagcatacgagaagattgaaaggcga-aaaagtaacagtcttat |
12321028 |
T |
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| Q |
216 |
tttctacaagacataccttggcttgaagaatacttccattacaaagccctagctgt |
271 |
Q |
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| T |
12321027 |
tttctacaagacataccttggcttgaagaatacttccattactaagcacaagctgt |
12320972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 269 - 309
Target Start/End: Complemental strand, 9453007 - 9452967
Alignment:
| Q |
269 |
tgttgctcttttaagatgaagcggtgaattcattaaatata |
309 |
Q |
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| T |
9453007 |
tgttgctcttttaagatgaagcggtaaattcattaaatata |
9452967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 12313540 - 12313495
Alignment:
| Q |
226 |
acataccttggcttgaagaatacttccattacaaagccctagctgt |
271 |
Q |
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| T |
12313540 |
acataccttggcttgaaggatacttccattactaagcacaagctgt |
12313495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 269 - 309
Target Start/End: Complemental strand, 46424194 - 46424154
Alignment:
| Q |
269 |
tgttgctcttttaagatgaagcggtgaattcattaaatata |
309 |
Q |
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| T |
46424194 |
tgttgctcttttaagatgaagcgatgaattcattaaatata |
46424154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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