View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1107_low_9 (Length: 510)
Name: NF1107_low_9
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 7e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 263 - 482
Target Start/End: Complemental strand, 4809475 - 4809245
Alignment:
| Q |
263 |
tcaccccgaaggatgtcccttttagaaagtttggttaggtttgtggggt--------------aggcatgtgacatcagccctgacgtaatctaatcaat |
348 |
Q |
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| T |
4809475 |
tcaccccgaaggatgtcccttttagaaagtttggttaggtttgtggggtgtaagttaatccttaggcatatgacatcagccctgacgtaatctaatcaat |
4809376 |
T |
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| Q |
349 |
aattgcacaaccccccacccactcattgatcctcctaacaatccagtataaaacatgagtagtactccctatgttttgtacaccaagactgaaaatcagt |
448 |
Q |
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| T |
4809375 |
aattgcac---ccccccttcactcattgatccccctaacaatccagtataaaacatgagtagtactccctatgttttgtacaccaagactgaaaatcagt |
4809279 |
T |
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| Q |
449 |
aactaagaatggcttctttttccctatcatttct |
482 |
Q |
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| T |
4809278 |
aactaagaatggcttctttttccctatcatttct |
4809245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 13 - 109
Target Start/End: Complemental strand, 4809726 - 4809630
Alignment:
| Q |
13 |
aatatataaacattatagcttgagagtatggtactccgaacttcaaagcctacactataagacccactcttaaagttaagacaaaaacaagaactac |
109 |
Q |
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||||||||||||||| ||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4809726 |
aatatataaacattaaagcttgagactagggtactccgaacctcaaagcctacactataagacccactcttaaagttaagacaaaaacaagaactac |
4809630 |
T |
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