View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1107_low_92 (Length: 303)

Name: NF1107_low_92
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1107_low_92
NF1107_low_92
[»] chr3 (11 HSPs)
chr3 (1-283)||(26799351-26799633)
chr3 (142-238)||(27024816-27024911)
chr3 (142-238)||(12718113-12718209)
chr3 (142-238)||(27036073-27036168)
chr3 (142-218)||(51328498-51328574)
chr3 (147-238)||(10494233-10494325)
chr3 (142-243)||(9127445-9127544)
chr3 (142-243)||(9135552-9135651)
chr3 (142-235)||(29582752-29582845)
chr3 (222-287)||(27024921-27024981)
chr3 (142-243)||(16483272-16483371)
[»] scaffold0001 (1 HSPs)
scaffold0001 (142-283)||(426732-426873)
[»] scaffold0160 (1 HSPs)
scaffold0160 (142-283)||(16780-16916)
[»] chr2 (4 HSPs)
chr2 (142-239)||(37127447-37127544)
chr2 (167-280)||(26414940-26415048)
chr2 (142-226)||(21484799-21484883)
chr2 (145-239)||(41254832-41254923)
[»] chr5 (12 HSPs)
chr5 (142-235)||(25723979-25724072)
chr5 (142-238)||(23344333-23344427)
chr5 (147-238)||(28334858-28334949)
chr5 (146-235)||(22407029-22407118)
chr5 (142-233)||(27689951-27690042)
chr5 (147-235)||(22416867-22416955)
chr5 (142-195)||(10134433-10134486)
chr5 (142-232)||(8242534-8242624)
chr5 (142-243)||(32747258-32747357)
chr5 (146-238)||(8840961-8841053)
chr5 (142-235)||(36520229-36520318)
chr5 (155-243)||(24855535-24855621)
[»] chr4 (10 HSPs)
chr4 (1-95)||(44255477-44255571)
chr4 (142-233)||(16741327-16741418)
chr4 (154-235)||(52598751-52598832)
chr4 (139-235)||(37397473-37397569)
chr4 (86-142)||(44254595-44254651)
chr4 (142-191)||(6404622-6404671)
chr4 (153-243)||(53269806-53269894)
chr4 (142-243)||(55612005-55612104)
chr4 (142-191)||(30452915-30452964)
chr4 (247-283)||(49604846-49604882)
[»] chr1 (7 HSPs)
chr1 (142-239)||(21535330-21535428)
chr1 (142-235)||(28639472-28639565)
chr1 (142-233)||(35989552-35989643)
chr1 (142-183)||(41933047-41933088)
chr1 (142-240)||(4851752-4851848)
chr1 (142-180)||(10222899-10222937)
chr1 (152-216)||(34286686-34286750)
[»] chr6 (3 HSPs)
chr6 (142-234)||(20819049-20819141)
chr6 (179-284)||(19624466-19624566)
chr6 (142-231)||(28547349-28547438)
[»] scaffold0054 (1 HSPs)
scaffold0054 (142-223)||(18570-18651)
[»] scaffold0210 (1 HSPs)
scaffold0210 (142-238)||(7689-7785)
[»] chr8 (3 HSPs)
chr8 (145-235)||(32123968-32124058)
chr8 (142-243)||(11347-11446)
chr8 (150-227)||(21268552-21268629)
[»] chr7 (8 HSPs)
chr7 (142-235)||(18500854-18500947)
chr7 (142-238)||(26187751-26187848)
chr7 (142-243)||(38257090-38257189)
chr7 (142-243)||(38264665-38264764)
chr7 (149-218)||(18043494-18043563)
chr7 (143-238)||(1377871-1377966)
chr7 (142-243)||(35584683-35584782)
chr7 (191-235)||(6056165-6056209)
[»] scaffold0048 (1 HSPs)
scaffold0048 (142-177)||(52337-52372)
[»] scaffold0064 (1 HSPs)
scaffold0064 (262-295)||(62510-62543)


Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 26799351 - 26799633
Alignment:
Q  1 tactttaatttgaactactgcaacccataacgaaaaggacttgcaatctggaatactattgaaaggatttttgaaatttaacaatgttagatttatcatg 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  26799351 tactttaatttgaactactgcaacccataacaaaaaggacttgcaatctggaatactattgaaagggttttcgaaatttaacaatgttagatttatcatg 26799450  T
Q  101 tacccctcttttcgtgctcatctttcaaaataattggatttaagaggattgttttgagttagatcatgctgccttgccaactaagatatttatattgtca 200  Q
    ||||||| ||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||| | |||||||||| ||||    
T  26799451 tacccctattttcgtgctcatctttcaaactaattgggtttaagatgattgttttgagttagatcatgctgccttgccaactgatatatttatatcgtca 26799550  T
Q  201 aggcaccaagatctagctaatagcaacctcttggtatttttgacaaataaagagttagaacctctttgcatctatctatctat 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26799551 aggcaccaagatctagctaatagcaacctcttggtatttttgacaaataaagagttagaacctctttgcatctatctatctat 26799633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 142 - 238
Target Start/End: Original strand, 27024816 - 27024911
Alignment:
Q  142 aagaggattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctcttggtatt 238  Q
    ||||||||| |||||||||||||| |||||||||||||||| ||||||||||| || ||||| | |||||||||||| || ||||||||||||||||    
T  27024816 aagaggattattttgagttagatcctgctgccttgccaactgagatatttata-tgccaaggaagcaagatctagctcatggcaacctcttggtatt 27024911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 142 - 238
Target Start/End: Original strand, 12718113 - 12718209
Alignment:
Q  142 aagaggattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctcttggtatt 238  Q
    |||||||||||||| ||||||||  |||| ||||||||||| ||||||||||||||   ||||||||  |||||||| |||||||||| ||||||||    
T  12718113 aagaggattgttttaagttagattctgctaccttgccaacttagatatttatattgctgaggcaccattatctagctcatagcaacctattggtatt 12718209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 142 - 238
Target Start/End: Original strand, 27036073 - 27036168
Alignment:
Q  142 aagaggattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctcttggtatt 238  Q
    |||||||||||||||||||||||| |||| |||||||||||  ||||||||||| | ||||| | |||||||||||| || |||||||| |||||||    
T  27036073 aagaggattgttttgagttagatcctgctcccttgccaact-ggatatttatatcgccaaggaagcaagatctagctcatggcaacctcctggtatt 27036168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 51328574 - 51328498
Alignment:
Q  142 aagaggattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagct 218  Q
    ||||||||| |||||||||||||| |||||| ||||||||| |||||||| ||| | ||||||||||||||||||||    
T  51328574 aagaggatttttttgagttagatcgtgctgcattgccaacttagatatttctatcgccaaggcaccaagatctagct 51328498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 238
Target Start/End: Complemental strand, 10494325 - 10494233
Alignment:
Q  147 gattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagc-aacctcttggtatt 238  Q
    ||||||||||||||||||| |||||||||||||||| |||||||| ||| | || |||| || |||||| || ||||| ||||||||||||||    
T  10494325 gattgttttgagttagatcttgctgccttgccaactgagatatttctatcgccacggcagcatgatctaactcatagcaaacctcttggtatt 10494233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 243
Target Start/End: Original strand, 9127445 - 9127544
Alignment:
Q  142 aagaggattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctcttggtattttt 241  Q
    |||||||||  |||||||||||||||||||||||||||| | | ||||| || | ||  ||||| ||||||||| || |||||||||||||| |||||||    
T  9127445 aagaggatttctttgagttagatcatgctgccttgccaaatgacatattcatctggt--aggcagcaagatctaactcatagcaacctcttgatattttt 9127542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 243
Target Start/End: Original strand, 9135552 - 9135651
Alignment:
Q  142 aagaggattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctcttggtattttt 241  Q
    |||||||||  |||||||||||||||||||||||||||| | | ||||| || | ||  ||||| ||||||||| || |||||||||||||| |||||||    
T  9135552 aagaggatttctttgagttagatcatgctgccttgccaaatgacatattcatctggt--aggcagcaagatctaactcatagcaacctcttgatattttt 9135649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 235
Target Start/End: Original strand, 29582752 - 29582845
Alignment:
Q  142 aagaggattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctcttggt 235  Q
    |||| ||||||||| |||||||| ||| || |||||||||| | ||||||||||||||| |||| |||||||| | |  ||||||| |||||||    
T  29582752 aagatgattgttttaagttagattatgttgtcttgccaactgacatatttatattgtcagggcagcaagatctggttcgtagcaacatcttggt 29582845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 287
Target Start/End: Original strand, 27024921 - 27024981
Alignment:
Q  222 agcaacctcttggtatttttgacaaataaagagttagaacctctttgcatctatctatctatctat 287  Q
    |||||||||||||||||     |||||||||| ||| |||||||||| ||||||||||||||||||    
T  27024921 agcaacctcttggtatt-----caaataaagatttataacctctttgtatctatctatctatctat 27024981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 243
Target Start/End: Original strand, 16483272 - 16483371
Alignment:
Q  142 aagaggattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctcttggtattttt 241  Q
    |||||||||  ||||| ||||||| |||||||||| ||| | | ||||| || |||   ||||| ||||||||| || |||||||||||||| |||||||    
T  16483272 aagaggatttctttgacttagatcctgctgccttgtcaaatgacatattcatcttgc--aggcagcaagatctaactcatagcaacctcttgatattttt 16483369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 142 - 283
Target Start/End: Complemental strand, 426873 - 426732
Alignment:
Q  142 aagaggattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctcttggtattttt 241  Q
    ||||||||||||||||||||||||||| ||||||||||||  |||||||||||| | |||||||||||||||| ||| ||||||||||||||||||||||    
T  426873 aagaggattgttttgagttagatcatgttgccttgccaacagagatatttatatcgccaaggcaccaagatctggctcatagcaacctcttggtattttt 426774  T
Q  242 gacaaataaagagttagaacctctttgcatctatctatctat 283  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  426773 gacaaataaagagttagaacctctttgtatctatctatctat 426732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 142 - 283
Target Start/End: Complemental strand, 16916 - 16780
Alignment:
Q  142 aagaggattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctcttggtattttt 241  Q
    |||||||||||||||||||||||| |||||||||||||||  |||||||||||| | |||||||||||||||||||| ||||||||||||| |||||       
T  16916 aagaggattgttttgagttagatcttgctgccttgccaaccgagatatttatatcgccaaggcaccaagatctagctcatagcaacctctttgtatt--- 16820  T
Q  242 gacaaataaagagttagaacctctttgcatctatctatctat 283  Q
      ||| ||||||||||||||||||||| ||||||||||||||    
T  16819 --caactaaagagttagaacctctttgtatctatctatctat 16780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 142 - 239
Target Start/End: Complemental strand, 37127544 - 37127447
Alignment:
Q  142 aagaggattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctcttggtattt 239  Q
    |||||||||||||||||||||||  || || ||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||    
T  37127544 aagaggattgttttgagttagatattgttgtcttgccaactaagatatttatatcgccaaggcaccaagatctagctcatagcaacctcttggtattt 37127447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 167 - 280
Target Start/End: Complemental strand, 26415048 - 26414940
Alignment:
Q  167 tgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctcttggtatttttgacaaataaagagttagaacctctt 266  Q
    |||||||||||||| |||||||||||||| | |||||||  |||||||| || ||||||||||||||||||||     ||||||||||||||||||||||    
T  26415048 tgctgccttgccaattaagatatttatatcgccaaggcaataagatctaactcatagcaacctcttggtattt-----aaataaagagttagaacctctt 26414954  T
Q  267 tgcatctatctatc 280  Q
    || |||||||||||    
T  26414953 tggatctatctatc 26414940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 142 - 226
Target Start/End: Complemental strand, 21484883 - 21484799
Alignment:
Q  142 aagaggattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaa 226  Q
    |||||||||||||||||||||||| |||||||||| ||||| |||||||| |||||  ||||||||||||||||||| |||||||    
T  21484883 aagaggattgttttgagttagatcctgctgccttgtcaactgagatatttctattgctaaggcaccaagatctagctcatagcaa 21484799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 239
Target Start/End: Original strand, 41254832 - 41254923
Alignment:
Q  145 aggattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctcttggtattt 239  Q
    |||||||||||||||||| || || || |||||||||| | |||||| |||||   | ||| || |||||| || ||| ||||||||||||||||    
T  41254832 aggattgttttgagttagctcttgttgtcttgccaactgacatatttctattg---atgcatcacgatctaactcataacaacctcttggtattt 41254923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 142 - 235
Target Start/End: Complemental strand, 25724072 - 25723979
Alignment:
Q  142 aagaggattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctcttggt 235  Q
    |||||||||||||||||||||||| |||||||||||||||| | |||||||||||| ||| ||| |||||||||||| ||||||||||||||||    
T  25724072 aagaggattgttttgagttagatcttgctgccttgccaactgacatatttatattgccaaagcaacaagatctagctcatagcaacctcttggt 25723979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 142 - 238
Target Start/End: Complemental strand, 23344427 - 23344333
Alignment:
Q  142 aagaggattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctcttggtatt 238  Q
    ||||||||||||  ||||||||||||| ||||||||||||| |||||||||||| | ||||||| |||||||||||| |||||||||||||||||||    
T  23344427 aagaggattgtt--gagttagatcatgttgccttgccaactgagatatttatatcgccaaggcagcaagatctagctcatagcaacctcttggtatt 23344333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 147 - 238
Target Start/End: Original strand, 28334858 - 28334949
Alignment:
Q  147 gattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctcttggtatt 238  Q
    ||||||||||||||||||| ||||| |||||||||||||||||| |||| ||||||| | ||||||||| || |||||||||||||||||||    
T  28334858 gattgttttgagttagatcttgctgtcttgccaactaagatattaatatcgtcaaggtagcaagatctaactcatagcaacctcttggtatt 28334949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 235
Target Start/End: Complemental strand, 22407118 - 22407029
Alignment:
Q  146 ggattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctcttggt 235  Q
    ||||||||||||||||||||||  ||||||||||||| | |||||||||||||||||||| |||||| ||||| |||| |||||||||||    
T  22407118 ggattgttttgagttagatcattttgccttgccaactgacatatttatattgtcaaggcaacaagatatagctcatagaaacctcttggt 22407029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 142 - 233
Target Start/End: Complemental strand, 27690042 - 27689951
Alignment:
Q  142 aagaggattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctcttg 233  Q
    |||||||||||||| |||||||||||| ||||||||| ||| |||||||||| | | ||||||| ||||||||| || ||||||||||||||    
T  27690042 aagaggattgttttaagttagatcatgatgccttgcctactgagatatttatgtcgccaaggcagcaagatctaactcatagcaacctcttg 27689951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 235
Target Start/End: Complemental strand, 22416955 - 22416867
Alignment:
Q  147 gattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctcttggt 235  Q
    |||||||||||||||||||| | ||||||| ||||| | |||||| ||||||||||||| |||||| || || |||| |||||||||||    
T  22416955 gattgttttgagttagatcacgttgccttgtcaactgacatatttctattgtcaaggcaacaagatataactcatagaaacctcttggt 22416867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 10134486 - 10134433
Alignment:
Q  142 aagaggattgttttgagttagatcatgctgccttgccaactaagatatttatat 195  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||| ||||||    
T  10134486 aagaggatcgttttgagttagatcatgctgccttgccaactgagatacttatat 10134433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 8242624 - 8242534
Alignment:
Q  142 aagaggattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctctt 232  Q
    |||||||||||||||||||||||  |||||| ||||||||| | |||  |||| || ||||||| || ||||||||| |||||||| ||||    
T  8242624 aagaggattgttttgagttagatattgctgcattgccaactgacataggtataatgccaaggcaacaggatctagctcatagcaacttctt 8242534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 243
Target Start/End: Original strand, 32747258 - 32747357
Alignment:
Q  142 aagaggattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctcttggtattttt 241  Q
    |||||||||  |||||||||||||||||||||||||||| | | ||||| || | |   ||||| ||||||||| || |||||||||||||| |||||||    
T  32747258 aagaggatttctttgagttagatcatgctgccttgccaaatgacatattcatctgg--caggcaacaagatctaactcatagcaacctcttgatattttt 32747355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 8840961 - 8841053
Alignment:
Q  146 ggattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctcttggtatt 238  Q
    ||||||||||||||||||| ||| |||||| |||||| | |||  ||||||| ||||| | || ||||||||| |||| |||||||| |||||    
T  8840961 ggattgttttgagttagattatgttgcctttccaactgacataggtatattgccaaggaaacacgatctagcttatagaaacctcttagtatt 8841053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 235
Target Start/End: Complemental strand, 36520318 - 36520229
Alignment:
Q  142 aagaggattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctcttggt 235  Q
    |||||||||||||||||||||   ||| |||||| |||||| | | |||||||||| ||||||| ||| |||||||| |||||||| |||||||    
T  36520318 aagaggattgttttgagttag---atgttgccttaccaacttacaaatttatattg-caaggcaacaatatctagctcatagcaacatcttggt 36520229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 24855621 - 24855535
Alignment:
Q  155 tgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctcttggtatttttga 243  Q
    ||||||||||| |||||||||||||| | | ||||| || | ||  ||||| ||||||||| || |||||||||||||| |||||||||    
T  24855621 tgagttagatcctgctgccttgccaaatgacatattcatctggt--aggcagcaagatctaactcatagcaacctcttgatatttttga 24855535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 44255571 - 44255477
Alignment:
Q  1 tactttaatttgaactactgcaacccataacgaaaaggacttgcaatctggaatactattgaaaggatttttgaaatttaacaatgttagattta 95  Q
    |||| ||||||||||||| |||||||||||| |||||||||||||||| ||||||| |||| |||| |||||||||||||||||||||| |||||    
T  44255571 tactctaatttgaactaccgcaacccataaccaaaaggacttgcaatccggaatacaattggaagggtttttgaaatttaacaatgttaaattta 44255477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 142 - 233
Target Start/End: Complemental strand, 16741418 - 16741327
Alignment:
Q  142 aagaggattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctcttg 233  Q
    |||||||||||||||||||||||||||||||||||| |||| | |||||| || || ||||||| ||| |||||||| ||| ||||||||||    
T  16741418 aagaggattgttttgagttagatcatgctgccttgcaaactgacatatttctaatgccaaggcaacaaaatctagctcataacaacctcttg 16741327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 154 - 235
Target Start/End: Original strand, 52598751 - 52598832
Alignment:
Q  154 ttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctcttggt 235  Q
    ||||||||||||  | ||||||||||||| | |||||||||||| ||||||| |||||||||||| | ||||||||||||||    
T  52598751 ttgagttagatcgcgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttggt 52598832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 235
Target Start/End: Complemental strand, 37397569 - 37397473
Alignment:
Q  139 tttaagaggattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctcttggt 235  Q
    |||||||| |||||||||||||||||||||  | |||||||||| | |||||| ||||  ||||||| |||||||| ||| ||| |||| |||||||    
T  37397569 tttaagagaattgttttgagttagatcatgacgtcttgccaactgacatatttctatttccaaggcaacaagatctggctcataacaacatcttggt 37397473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 142
Target Start/End: Complemental strand, 44254651 - 44254595
Alignment:
Q  86 gttagatttatcatgtacccctcttttcgtgctcatctttcaaaataattggattta 142  Q
    |||| |||||| ||||||||||||||||||||||||||||||||  |||||||||||    
T  44254651 gttaaatttattatgtacccctcttttcgtgctcatctttcaaaccaattggattta 44254595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 6404671 - 6404622
Alignment:
Q  142 aagaggattgttttgagttagatcatgctgccttgccaactaagatattt 191  Q
    ||||||||||||||||||||||||||||||| ||||||||| | ||||||    
T  6404671 aagaggattgttttgagttagatcatgctgctttgccaactgacatattt 6404622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 243
Target Start/End: Original strand, 53269806 - 53269894
Alignment:
Q  153 tttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctcttggtatttttga 243  Q
    |||||||||||||||||||||||||||| ||| ||||| || | |   || || || |||||| || |||||||||||||| |||||||||    
T  53269806 tttgagttagatcatgctgccttgccaaataacatattcatctgg--cagacagcacgatctaactcatagcaacctcttgatatttttga 53269894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 243
Target Start/End: Complemental strand, 55612104 - 55612005
Alignment:
Q  142 aagaggattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctcttggtattttt 241  Q
    |||||||||  ||||| ||||||| |||||||||| ||| | | ||||| || |||   ||||| ||||||||| || |||||||||||||| |||||||    
T  55612104 aagaggatttctttgacttagatcctgctgccttgtcaaatgacatattcatcttgc--aggcagcaagatctaactcatagcaacctcttgatattttt 55612007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 30452915 - 30452964
Alignment:
Q  142 aagaggattgttttgagttagatcatgctgccttgccaactaagatattt 191  Q
    ||||||||||||||||||||||||| | || |||||||||| | ||||||    
T  30452915 aagaggattgttttgagttagatcacgttgtcttgccaactgacatattt 30452964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 283
Target Start/End: Original strand, 49604846 - 49604882
Alignment:
Q  247 ataaagagttagaacctctttgcatctatctatctat 283  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  49604846 ataaagagttagagcctctttgtatctatctatctat 49604882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 142 - 239
Target Start/End: Complemental strand, 21535428 - 21535330
Alignment:
Q  142 aagaggattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagc-aacctcttggtattt 239  Q
    |||||||||||||||||||||||| |||||||||||||| | |||||||| ||||| ||| |||||||||||||||| ||| | |||||||||||||||    
T  21535428 aagaggattgttttgagttagatcctgctgccttgccaagtgagatatttttattgccaatgcaccaagatctagctcataccaaacctcttggtattt 21535330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 142 - 235
Target Start/End: Complemental strand, 28639565 - 28639472
Alignment:
Q  142 aagaggattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctcttggt 235  Q
    ||||||||||||||  ||||||| |||||||| |||||||| | ||||||||||||||||| || |||||||||||| ||||||||||||||||    
T  28639565 aagaggattgttttacgttagattatgctgccatgccaactgacatatttatattgtcaagacagcaagatctagctcatagcaacctcttggt 28639472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 142 - 233
Target Start/End: Complemental strand, 35989643 - 35989552
Alignment:
Q  142 aagaggattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctcttg 233  Q
    ||||||||||||||||||||||||||| ||||||||||||| | |||||||||||| |||| ||  |||||||| || | ||||||||||||    
T  35989643 aagaggattgttttgagttagatcatgatgccttgccaactgacatatttatattgccaagacagtaagatctaacttaaagcaacctcttg 35989552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 183
Target Start/End: Complemental strand, 41933088 - 41933047
Alignment:
Q  142 aagaggattgttttgagttagatcatgctgccttgccaacta 183  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  41933088 aagaggattgttttgagttagatcatgttgccttgccaacta 41933047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 240
Target Start/End: Original strand, 4851752 - 4851848
Alignment:
Q  142 aagaggattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctcttggtatttt 240  Q
    |||||||||  |||||||||||||||||||||||||||| | | ||||| || | |   ||||| ||||||||| || ||| |||||||||| ||||||    
T  4851752 aagaggatttctttgagttagatcatgctgccttgccaaatgacatattcatctgg--caggcaacaagatctaactcataacaacctcttgatatttt 4851848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 10222937 - 10222899
Alignment:
Q  142 aagaggattgttttgagttagatcatgctgccttgccaa 180  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  10222937 aagaggatttctttgagttagatcatgctgccttgccaa 10222899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 34286686 - 34286750
Alignment:
Q  152 ttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctag 216  Q
    ||||||| ||||||| ||||| ||| |||||||||||||| || || |||| || ||||||||||    
T  34286686 ttttgagctagatcacgctgctttgacaactaagatatttttaatggcaagacaacaagatctag 34286750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 8e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 142 - 234
Target Start/End: Original strand, 20819049 - 20819141
Alignment:
Q  142 aagaggattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctcttgg 234  Q
    ||||||||||||||||||||||||||| || ||| |||||| ||||||||||||   ||||||||||||||||| || |||||||||||||||    
T  20819049 aagaggattgttttgagttagatcatgttgtctttccaactgagatatttatatcaccaaggcaccaagatctaactcatagcaacctcttgg 20819141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 179 - 284
Target Start/End: Original strand, 19624466 - 19624566
Alignment:
Q  179 aactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctcttggtatttttgacaaataaagagttagaacctctttgcatctatcta 278  Q
    |||| |||||||||||| | ||||||| |||||||||||||||| ||||||||||| |||     |||||||| ||||| |||||||||| ||||| |||    
T  19624466 aactgagatatttatatcgccaaggcaacaagatctagctaataacaacctcttggcatt-----caaataaatagttaaaacctctttgtatctaacta 19624560  T
Q  279 tctatc 284  Q
    ||||||    
T  19624561 tctatc 19624566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 231
Target Start/End: Original strand, 28547349 - 28547438
Alignment:
Q  142 aagaggattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctct 231  Q
    |||||||||||||| ||||||||| || |||||||||| || |||||||| ||| | ||| | |  ||||||||||| ||||||||||||    
T  28547349 aagaggattgtttttagttagatcttgttgccttgccagctgagatatttctatcgccaatgtatgaagatctagctcatagcaacctct 28547438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 142 - 223
Target Start/End: Complemental strand, 18651 - 18570
Alignment:
Q  142 aagaggattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatag 223  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||| ||| | |||| ||||||||||||||| ||||    
T  18651 aagaggattgttttgagttagatcttgctgccttgccaactgagatatttctatcgccaagacaccaagatctagctcatag 18570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 238
Target Start/End: Complemental strand, 7785 - 7689
Alignment:
Q  142 aagaggattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctcttggtatt 238  Q
    |||||||||||||||||||||||| |||| ||||||||||| ||||||||||||     ||| |||| ||||||||| |||||||||||||||||||    
T  7785 aagaggattgttttgagttagatcctgctaccttgccaacttagatatttatatccctgaggaaccatgatctagctcatagcaacctcttggtatt 7689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 145 - 235
Target Start/End: Complemental strand, 32124058 - 32123968
Alignment:
Q  145 aggattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctcttggt 235  Q
    ||||||||||||||||||||| |||||||||||||||| |||| |||||||   |||||||  |||||||||||  |||||||||||||||    
T  32124058 aggattgttttgagttagatcttgctgccttgccaactgagatttttatatctccaaggcagtaagatctagctcttagcaacctcttggt 32123968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 243
Target Start/End: Complemental strand, 11446 - 11347
Alignment:
Q  142 aagaggattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctcttggtattttt 241  Q
    |||||||||  ||||||||||||| |||||||||||||| ||| ||||| || | |  ||| || ||||||||| || ||||||||||||||||||||||    
T  11446 aagaggatttctttgagttagatcctgctgccttgccaaataacatattcatctgg--aagacaacaagatctaactcatagcaacctcttggtattttt 11349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 21268629 - 21268552
Alignment:
Q  150 tgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaac 227  Q
    |||||||||||||||| ||||| ||| |||||| |||||||| ||||||||||||| || ||||||||| ||| ||||    
T  21268629 tgttttgagttagatcctgctgtcttaccaactgagatatttctattgtcaaggcagcacgatctagctcatatcaac 21268552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 235
Target Start/End: Original strand, 18500854 - 18500947
Alignment:
Q  142 aagaggattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctcttggt 235  Q
    ||||||||||||||||||||||||||| || |||||||||| | |||  ||||||| ||||||| |||||||||||| |||| ||| |||||||    
T  18500854 aagaggattgttttgagttagatcatgttgtcttgccaactgacataggtatattgccaaggcatcaagatctagctcatagaaacatcttggt 18500947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 238
Target Start/End: Complemental strand, 26187848 - 26187751
Alignment:
Q  142 aagaggattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagc-aacctcttggtatt 238  Q
    |||| ||||||||||||||||||| |||||||||||||||| |||||||| ||| | |||||||  |||||||| || ||||| ||||||||||||||    
T  26187848 aagatgattgttttgagttagatcctgctgccttgccaactgagatatttctatcgccaaggcaataagatctaactcatagcaaacctcttggtatt 26187751  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 243
Target Start/End: Complemental strand, 38257189 - 38257090
Alignment:
Q  142 aagaggattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctcttggtattttt 241  Q
    |||||||||  |||||||||||||||||||||||||||| | | ||||| || | |  |||||| ||||||||| || |||||||||||||  |||||||    
T  38257189 aagaggatttctttgagttagatcatgctgccttgccaaatgacatattcatctgg--aaggcaacaagatctaactcatagcaacctcttaatattttt 38257092  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 243
Target Start/End: Complemental strand, 38264764 - 38264665
Alignment:
Q  142 aagaggattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctcttggtattttt 241  Q
    |||||||||  |||||||||||||||||||||||||||| | | ||||| || | |  |||||| ||||||||| || |||||||||||||  |||||||    
T  38264764 aagaggatttctttgagttagatcatgctgccttgccaaatgacatattcatctgg--aaggcagcaagatctaactcatagcaacctcttaatattttt 38264667  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 218
Target Start/End: Original strand, 18043494 - 18043563
Alignment:
Q  149 ttgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagct 218  Q
    ||||||| ||| ||||| |  ||||||||||||| | |||||||||||||||||||| ||||||||||||    
T  18043494 ttgtttttagtaagatctttttgccttgccaactgacatatttatattgtcaaggcaacaagatctagct 18043563  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 238
Target Start/End: Original strand, 1377871 - 1377966
Alignment:
Q  143 agaggattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctcttggtatt 238  Q
    ||||||| |||||||||||||||  |||||||| |||| | |||||||||||| |   |||||  |  |||||||| |||||||||||||||||||    
T  1377871 agaggatagttttgagttagatccggctgcctttccaattgagatatttatatcgcataggcagaacaatctagctcatagcaacctcttggtatt 1377966  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 243
Target Start/End: Complemental strand, 35584782 - 35584683
Alignment:
Q  142 aagaggattgttttgagttagatcatgctgccttgccaactaagatatttatattgtcaaggcaccaagatctagctaatagcaacctcttggtattttt 241  Q
    |||||||||  |||||||||||||||||||||||||||| | | ||||| ||   |   ||||| ||||||||| || |||||||||||||| |||||||    
T  35584782 aagaggatttctttgagttagatcatgctgccttgccaaatgacatattcatccgg--caggcagcaagatctaactcatagcaacctcttgatattttt 35584685  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 235
Target Start/End: Complemental strand, 6056209 - 6056165
Alignment:
Q  191 tatattgtcaaggcaccaagatctagctaatagcaacctcttggt 235  Q
    ||||||||||| ||| |||||||||||| ||||||||||||||||    
T  6056209 tatattgtcaaagcaacaagatctagctcatagcaacctcttggt 6056165  T

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Target: scaffold0048 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 177
Target Start/End: Original strand, 52337 - 52372
Alignment:
Q  142 aagaggattgttttgagttagatcatgctgccttgc 177  Q
    ||||||||||||||||||||||||||||||||||||    
T  52337 aagaggattgttttgagttagatcatgctgccttgc 52372  T

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Target: scaffold0064 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 295
Target Start/End: Complemental strand, 62543 - 62510
Alignment:
Q  262 ctctttgcatctatctatctatctatatattttt 295  Q
    ||||||| ||||||||||||||||||||||||||    
T  62543 ctctttgtatctatctatctatctatatattttt 62510  T

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