View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1107_low_97 (Length: 287)
Name: NF1107_low_97
Description: NF1107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1107_low_97 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 41225563 - 41225342
Alignment:
| Q |
1 |
ccctagcttgatgtatgtaaacatcaactactccaataaattcctctggattagacactgcaacagcttcttttccattaacctcaatgtctttagacaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41225563 |
ccctagcttgatgtatgtaaacatcaactactccaataaattcctctggattagacactgcaacagcttcttttccattaacctcaatgtctttagacaa |
41225464 |
T |
|
| Q |
101 |
aggactagagctttgtgttaaatcatcagacttatacttctcaccatgtcccaagatagaactcttgaatggtgacacaacagattgtggagattccatg |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41225463 |
aggactagagctttgtgttaaatcatcagacttatacttctcaccatgtcccaagatagaactcttgaatggtgacacaacagattgtggagattccatg |
41225364 |
T |
|
| Q |
201 |
atatcagagtcaataggaacct |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
41225363 |
atatcagagtcaataggaacct |
41225342 |
T |
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