View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11080_high_12 (Length: 296)
Name: NF11080_high_12
Description: NF11080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11080_high_12 |
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| [»] scaffold0438 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 52186873 - 52187158
Alignment:
| Q |
1 |
gcattttgtccaaaagatggatcattctccggaggagtcttcccactcttacactaagttcttcatactttaggaccggnnnnnnngtttgatgaatttg |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
52186873 |
gcattttgtccaaaagatggatcattctctggaggagtcttcccactcttacactaagttcttcatactttaggtccggaaaaaaagtttgatgaatttg |
52186972 |
T |
|
| Q |
101 |
tgtctcagattctctctcttcgtgatggctcaaccgccatccacactcttgatttgtatcgtcgtcagtacatgaagcctaccctactcccaaggatcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52186973 |
tgtctcagattctctctcttcgtgatggctcaaccgccatccacactcttgatttgtatcgtcgtcagtacatgaagcctaccctactcccaaggatcat |
52187072 |
T |
|
| Q |
201 |
agaatacactgtttcacacaatgtccaacacttaatacttgattacacttgtcatattgaagactttccttcttgcatcttttcat |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52187073 |
agaatacactgtttcacacaatgtccaacacttaatacttgattacacttgtcatattgaagactttccttcttgcatcttttcat |
52187158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 4 - 286
Target Start/End: Original strand, 38989163 - 38989444
Alignment:
| Q |
4 |
ttttgtccaaaagatggatcattctccggaggagtcttcccactcttacactaagttcttcatactttaggaccggnnnnnnngtttgatgaatttgtgt |
103 |
Q |
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|||||||||||||||||||||||||| ||| ||||||| ||||| ||||||| || |||||||||| |||| || | ||||||||| ||||||| |
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| T |
38989163 |
ttttgtccaaaagatggatcattctctggaagagtctttccactattacacttagatcttcatactctaggcccagaaaaag-gtttgatgagtttgtgt |
38989261 |
T |
|
| Q |
104 |
ctcagattctctctcttcgtgatggctcaaccgccatccacactcttgatttgtatcgtcgtcagtacatgaagcctaccctactcccaaggatcataga |
203 |
Q |
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| T |
38989262 |
ctcggattttttctcttcgcgatggctcaaccgccatccacactcttgatttgtatcgtcgtcattccatgaagcatagcctactccggaagatcataga |
38989361 |
T |
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| Q |
204 |
atacactgtttcacacaatgtccaacacttaatacttgattacacttgtcatattgaagactttccttcttgcatcttttcat |
286 |
Q |
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||| ||||||||||||| ||||||||||||| | ||||||||||||||||||||||| | ||||| |||||| ||||||||| |
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| T |
38989362 |
atatgctgtttcacacaacgtccaacacttaagaattgattacacttgtcatattgaaaattttccgtcttgcctcttttcat |
38989444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 43867582 - 43867505
Alignment:
| Q |
1 |
gcattttgtccaaaagatggatcattctccggaggagtcttcccactcttacactaagttcttcatactttaggaccg |
78 |
Q |
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| T |
43867582 |
gcattttgtccaaaagatggatcactctctggaagggtcttcctactattacattaagttcttcgaactttaggaccg |
43867505 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 43875258 - 43875185
Alignment:
| Q |
1 |
gcattttgtccaaaagatggatcattctccggaggagtcttcccactcttacactaagttcttcatactttaggacc |
77 |
Q |
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|||||||||||||||||||||||| ||| ||| ||||||||||||||||||| || | |||||||||||||||| |
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| T |
43875258 |
gcattttgtccaaaagatggatcaatctttggaagagtcttcccactcttacatta---tgttcatactttaggacc |
43875185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 43864091 - 43864014
Alignment:
| Q |
1 |
gcattttgtccaaaagatggatcattctccggaggagtcttcccact-cttacactaagttcttcatactttaggacc |
77 |
Q |
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|||||||||||||||||||||||| ||| ||| ||||||||| ||| ||||| ||||||||||| ||||||||||| |
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| T |
43864091 |
gcattttgtccaaaagatggatcaatctttggaagagtcttcctactaattacattaagttcttcaaactttaggacc |
43864014 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 476087 - 476161
Alignment:
| Q |
3 |
attttgtccaaaagatggatcattctccggaggagtcttcccactcttacactaagttcttcatactttaggacc |
77 |
Q |
| |
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||||| |||||||||||||||| |||| ||| | ||||||||| |||||||||||||||||| ||||||||||| |
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| T |
476087 |
attttatccaaaagatggatcaatctctggaatactcttcccacccttacactaagttcttcaaactttaggacc |
476161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 778239 - 778167
Alignment:
| Q |
1 |
gcattttgtccaaaagatggatcattctccggaggagtcttcccactcttacactaagttcttcatactttag |
73 |
Q |
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|||||||||||||||||||||||| |||| ||| | ||| |||||||||||| ||||||||||| ||||||| |
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| T |
778239 |
gcattttgtccaaaagatggatcaatctctggaaaattctacccactcttacattaagttcttcacactttag |
778167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 480999 - 481073
Alignment:
| Q |
3 |
attttgtccaaaagatggatcattctccggaggagtcttcccactcttacactaagttcttcatactttaggacc |
77 |
Q |
| |
|
||||| |||||||||||||||| |||| ||| || ||||||||| ||||| ||||||||||| ||||||||||| |
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| T |
480999 |
attttatccaaaagatggatcaatctctggaagactcttcccacgcttaccttaagttcttcaaactttaggacc |
481073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 229
Target Start/End: Original strand, 476278 - 476312
Alignment:
| Q |
195 |
gatcatagaatacactgtttcacacaatgtccaac |
229 |
Q |
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| T |
476278 |
gatcatagaatacactttttcacacaatgtccaac |
476312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0438 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0438
Description:
Target: scaffold0438; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 5363 - 5415
Alignment:
| Q |
1 |
gcattttgtccaaaagatggatcattctccggaggagtcttcccactcttaca |
53 |
Q |
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||||||| |||||||||||||||| |||| ||| || |||||||||||||||| |
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| T |
5363 |
gcattttatccaaaagatggatcaatctctggaagactcttcccactcttaca |
5415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 33958116 - 33958064
Alignment:
| Q |
1 |
gcattttgtccaaaagatggatcattctccggaggagtcttcccactcttaca |
53 |
Q |
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||||||| |||||||||||||||| |||| ||| || ||||| |||||||||| |
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| T |
33958116 |
gcattttatccaaaagatggatcaatctctggaagactcttcacactcttaca |
33958064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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