View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11080_high_2 (Length: 759)
Name: NF11080_high_2
Description: NF11080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11080_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 539; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 19 - 638
Target Start/End: Complemental strand, 32489823 - 32489203
Alignment:
| Q |
19 |
aaacaaagcttctaata-ctaattcagagactttaatttacaattctcaagattttcaaagttacaaatttaccaccccaaagccccttccatcactaaa |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32489823 |
aaacaaagcttctaataactaattcagagactttaatttacaattctcaagattttcaaagttacaaatttaccaccccaaagccccttccatcactaaa |
32489724 |
T |
|
| Q |
118 |
gttattaggcaaccacctttgatttattggactaaatgcaatacagatagagcttcttccggtaatctaggagcctcctcttgtggagaaattttcaaag |
217 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| || |
|
|
| T |
32489723 |
gttattaagcaaccacctttgattcattggactaaatgcaatacagatagagcttcttccggtaatctaggagcctcctcttgtggaggagttttcagag |
32489624 |
T |
|
| Q |
218 |
attataaaggtaactgtttagattgttttgctgagtactttgggaaattcaacctcttaccgagcagaactttgtggtgctatgaaagcaatagaaactg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32489623 |
attataaaggtaactgtttagattgttttgctgagtactt-gggaaattcaacttcttaccaagcagaactttgtggtgctatgaaagcaatagaaactg |
32489525 |
T |
|
| Q |
318 |
catttgnnnnnnnnnggttaa-tctttagctagagtcagattcagcgttagttgtgcaagcattcaagtctactaacttaatttcttggcaagttagaaa |
416 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32489524 |
catttgaaaaaaaaaggttaaatctttagctagagtcagattcagcgttagttgtgcaagcattcaagtctactaacttaatttcttggcaagttagaaa |
32489425 |
T |
|
| Q |
417 |
tatgaattgtatagttactcatatataaggaaggaaaccaggtaacagatttccttgcaaactttggtctatctttaaaatcttatgtttactggcctaa |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32489424 |
tatgaattgtatagttactcatatataaggaaggaaaccaggtaacagatttccttgcaaactttggtctatctttaaaatcttatgtttactggcctaa |
32489325 |
T |
|
| Q |
517 |
tatatctttatttgcaagggaaacttatgtcaagagcacaattgttatacctaattttaggttttcttcttcttgagggagttttggtttggtcccctcc |
616 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32489324 |
tatatctttatttgcaagggaaacttatgtcaagagcacaattgttatacctaattttaggttttcttcttcttgagggagttttggtttggttccctcc |
32489225 |
T |
|
| Q |
617 |
ctcatttttgtacttaatctcc |
638 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
32489224 |
ctcatttttgtacttaatctcc |
32489203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 578 - 638
Target Start/End: Original strand, 44883049 - 44883109
Alignment:
| Q |
578 |
ttttcttcttcttgagggagttttggtttggtcccctccctcatttttgtacttaatctcc |
638 |
Q |
| |
|
||||| ||||||||||||| | |||||||||||||||||||| ||||||||| || ||||| |
|
|
| T |
44883049 |
ttttcatcttcttgagggaatcttggtttggtcccctccctcttttttgtacctattctcc |
44883109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 412 - 484
Target Start/End: Original strand, 14699313 - 14699387
Alignment:
| Q |
412 |
agaaatatgaattgtatagttactcata--tataaggaaggaaaccaggtaacagatttccttgcaaactttggt |
484 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||| |||||| || || ||| |||||| |||||||||||||||| |
|
|
| T |
14699313 |
agaaatatgaattgtatagttacttatatctatagggaagggaatcaagtagcagattcccttgcaaactttggt |
14699387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 711 - 747
Target Start/End: Complemental strand, 32489132 - 32489096
Alignment:
| Q |
711 |
tagataaaaagatcaaaagttaagtctgatgtccatc |
747 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32489132 |
tagataaagagatcaaaagttaagtctgatgtccatc |
32489096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 415 - 490
Target Start/End: Original strand, 12747225 - 12747302
Alignment:
| Q |
415 |
aatatgaattgtatagttactcatatat--aaggaaggaaaccaggtaacagatttccttgcaaactttggtctatct |
490 |
Q |
| |
|
|||||| |||||||||| ||||| || | |||||||||||||| ||| | |||| ||||||||||||||| |||||| |
|
|
| T |
12747225 |
aatatgcattgtatagtcactcacattttcaaggaaggaaaccaagtagctgattcccttgcaaactttgggctatct |
12747302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 410 - 506
Target Start/End: Original strand, 26206569 - 26206667
Alignment:
| Q |
410 |
ttagaaatatgaattgtatagttactca--tatataaggaaggaaaccaggtaacagatttccttgcaaactttggtctatctttaaaatcttatgttt |
506 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||| |||||| |||||| |||||||||||||||| || | ||||| || ||||||| |
|
|
| T |
26206569 |
ttagaaacatgaattgtatagttactcacatatataaggaaggaaatcaggtagcagattcccttgcaaactttggtttaaccttaaactcctatgttt |
26206667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 564 - 629
Target Start/End: Original strand, 41341689 - 41341754
Alignment:
| Q |
564 |
tacctaattttaggttttcttcttcttgagggagttttggtttggtcccctccctcatttttgtac |
629 |
Q |
| |
|
||||||||| || ||||||| |||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
41341689 |
tacctaattataagttttctgcttcttgagggagttttgctttggtcccctccctctattttgtac |
41341754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 566 - 628
Target Start/End: Original strand, 11527092 - 11527151
Alignment:
| Q |
566 |
cctaattttaggttttcttcttcttgagggagttttggtttggtcccctccctcatttttgta |
628 |
Q |
| |
|
|||||||||||||| ||||| || ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11527092 |
cctaattttaggttctcttcatc---agggagttttggtttggtcccctcccttctttttgta |
11527151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 572 - 619
Target Start/End: Original strand, 42877865 - 42877912
Alignment:
| Q |
572 |
tttaggttttcttcttcttgagggagttttggtttggtcccctccctc |
619 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
42877865 |
tttaggttttcttctcactaagggagttttggtttggtcccctccctc |
42877912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University