View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11080_high_3 (Length: 563)

Name: NF11080_high_3
Description: NF11080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11080_high_3
NF11080_high_3
[»] chr6 (29 HSPs)
chr6 (378-546)||(27214231-27214393)
chr6 (378-546)||(27234835-27234997)
chr6 (378-546)||(25071473-25071635)
chr6 (379-546)||(26848469-26848636)
chr6 (157-255)||(27309679-27309777)
chr6 (392-546)||(26811337-26811485)
chr6 (451-537)||(26974933-26975019)
chr6 (451-546)||(26949542-26949637)
chr6 (442-537)||(26635562-26635657)
chr6 (442-537)||(26741528-26741623)
chr6 (429-546)||(27665328-27665445)
chr6 (280-339)||(27214169-27214228)
chr6 (280-339)||(27235000-27235059)
chr6 (451-537)||(26959046-26959132)
chr6 (160-252)||(26935999-26936091)
chr6 (465-546)||(27229127-27229208)
chr6 (465-546)||(27698705-27698786)
chr6 (465-546)||(27725056-27725137)
chr6 (465-544)||(27604918-27604997)
chr6 (465-546)||(27611213-27611294)
chr6 (465-545)||(28781034-28781114)
chr6 (465-545)||(28786173-28786253)
chr6 (465-545)||(28792294-28792374)
chr6 (74-109)||(28093799-28093834)
chr6 (472-546)||(31284190-31284264)
chr6 (500-545)||(27593232-27593277)
chr6 (500-545)||(27678876-27678921)
chr6 (465-546)||(27718590-27718671)
chr6 (489-545)||(27531409-27531465)
[»] chr2 (6 HSPs)
chr2 (452-544)||(17993897-17993989)
chr2 (24-117)||(6213784-6213877)
chr2 (27-116)||(45464150-45464239)
chr2 (74-116)||(24589151-24589195)
chr2 (75-116)||(39547923-39547964)
chr2 (74-110)||(10818752-10818788)
[»] chr1 (4 HSPs)
chr1 (23-114)||(40019838-40019929)
chr1 (76-115)||(42309561-42309600)
chr1 (75-117)||(16040208-16040250)
chr1 (75-116)||(46536471-46536512)
[»] scaffold0349 (2 HSPs)
scaffold0349 (465-546)||(3633-3714)
scaffold0349 (465-546)||(14566-14647)
[»] scaffold1254 (1 HSPs)
scaffold1254 (465-545)||(129-209)
[»] scaffold0419 (1 HSPs)
scaffold0419 (465-545)||(7420-7500)
[»] chr7 (2 HSPs)
chr7 (24-116)||(27234583-27234674)
chr7 (74-116)||(45890793-45890835)
[»] chr4 (5 HSPs)
chr4 (14-115)||(49448912-49449010)
chr4 (24-116)||(12619768-12619859)
chr4 (69-104)||(51076358-51076393)
chr4 (75-104)||(9051924-9051953)
chr4 (75-116)||(50714713-50714754)
[»] chr8 (3 HSPs)
chr8 (75-112)||(39416441-39416478)
chr8 (30-116)||(42412318-42412404)
chr8 (24-117)||(15559065-15559157)
[»] chr3 (1 HSPs)
chr3 (75-116)||(27152992-27153033)
[»] scaffold0277 (2 HSPs)
scaffold0277 (465-545)||(13844-13924)
scaffold0277 (489-545)||(4883-4939)
[»] chr5 (2 HSPs)
chr5 (74-116)||(39183563-39183605)
chr5 (77-110)||(13135876-13135909)


Alignment Details
Target: chr6 (Bit Score: 106; Significance: 9e-53; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 378 - 546
Target Start/End: Original strand, 27214231 - 27214393
Alignment:
Q  378 tcactatcatttcttctcatggctatgcaaccaccttcttcttcttcctcgtcctcctcccgcctctctcataatttcagctatgacgtgttcattagtt 477  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||| ||      |||| |||||||| ||||||||||||||||||||||||||||||    
T  27214231 tcactatcatttcctctcatggctatgcaaccaccttcttctacttcttc------ctccggcctctctaataatttcagctatgacgtgttcattagtt 27214324  T
Q  478 tcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatcc 546  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||  |||||||    
T  27214325 tcaggggtaccgacactcgacacggtttcaccggtaatctctataaagctctttgtgacaaaggaatcc 27214393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 378 - 546
Target Start/End: Complemental strand, 27234997 - 27234835
Alignment:
Q  378 tcactatcatttcttctcatggctatgcaaccaccttcttcttcttcctcgtcctcctcccgcctctctcataatttcagctatgacgtgttcattagtt 477  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||| ||      |||| |||||||| ||||||||||||||||||||||||||||||    
T  27234997 tcactatcatttcctctcatggctatgcaaccaccttcttctacttcttc------ctccggcctctctaataatttcagctatgacgtgttcattagtt 27234904  T
Q  478 tcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatcc 546  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||  |||||||    
T  27234903 tcaggggtaccgacactcgacacggtttcaccggtaatctctataaagctctttgtgacaaaggaatcc 27234835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 378 - 546
Target Start/End: Original strand, 25071473 - 25071635
Alignment:
Q  378 tcactatcatttcttctcatggctatgcaaccaccttcttcttcttcctcgtcctcctcccgcctctctcataatttcagctatgacgtgttcattagtt 477  Q
    |||||| || || |||||||||||||||||  ||||||||| ||   || ||||||| |||   ||||| || |||||| ||||||||||||||||||||    
T  25071473 tcactaccacttattctcatggctatgcaattaccttcttcatc---cttgtcctccaccc---tctctaatgatttcatctatgacgtgttcattagtt 25071566  T
Q  478 tcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatcc 546  Q
    ||||||||||||||||||||  |||||| ||||||||||| || ||||||||||||||||  |||||||    
T  25071567 tcaggggtaccgacactcgattcggttttaccggtaatctttataaagctctttctgacaaaggaatcc 25071635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 379 - 546
Target Start/End: Original strand, 26848469 - 26848636
Alignment:
Q  379 cactatcatttcttctcatggctatgcaaccaccttcttcttcttcctcgtcctcctcccgcctctctcataatttcagctatgacgtgttcattagttt 478  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||| |  || |||     ||   ||||||||| |||||| ||||||||||||||    
T  26848469 cactatcatttcttctcatggctgtgcaatcaccttcttcttcttcctctttgtcttcctcttcctgcaataatttcaactatgatgtgttcattagttt 26848568  T
Q  479 caggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatcc 546  Q
    |||||| ||||||||| ||  | ||||||| ||||||||||| ||||||||||||||||  |||||||    
T  26848569 caggggcaccgacactagattcagtttcactggtaatctctataaagctctttctgacaatggaatcc 26848636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 157 - 255
Target Start/End: Complemental strand, 27309777 - 27309679
Alignment:
Q  157 gtcaaaaatcgaaaagtaatctctgtggagatattacaagaagtcacatcgaagcagaatatagaaaatagaaaagaaagccacatgaaaccacatctt 255  Q
    ||||||||| |||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||| |||||||||| ||| |||| |||||||||    
T  27309777 gtcaaaaattgaaaagtaatctctgtcgatatattacaagaagtcacatggaagcagaatatagaaaattgaaaagaaagtcacttgaagccacatctt 27309679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 392 - 546
Target Start/End: Original strand, 26811337 - 26811485
Alignment:
Q  392 tctcatggctatgcaaccaccttcttcttcttcctcgtcctcctcccgcctctctcataatttcagctatgacgtgttcattagtttcaggggtaccgac 491  Q
    ||||||||||||||||  ||||||||| ||   ||||||||||||||   ||||| || |||||| ||||||||||||||||||||||||||||| ||||    
T  26811337 tctcatggctatgcaattaccttcttcctc---ctcgtcctcctccc---tctctaatgatttcatctatgacgtgttcattagtttcaggggtatcgac 26811430  T
Q  492 actcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatcc 546  Q
    ||||||   || ||||||||| ||||||| |||||||||| |||||  |||||||    
T  26811431 actcgatctggcttcaccggtcatctctataaagctctttgtgacaaaggaatcc 26811485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 451 - 537
Target Start/End: Original strand, 26974933 - 26975019
Alignment:
Q  451 atttcagctatgacgtgttcattagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgaca 537  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||  ||||||||||||||| ||||| ||||||||||||||||    
T  26974933 atttcacctatgacgtgttcattagtttcagaggtaccgacactcgattcggtttcaccggtaacctctataaagctctttctgaca 26975019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 451 - 546
Target Start/End: Original strand, 26949542 - 26949637
Alignment:
Q  451 atttcagctatgacgtgttcattagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatcc 546  Q
    |||||| || ||| ||||||||||||||||| |||||||||||||||  ||||||||||||||||||||| |||||||| ||||||| ||||||||    
T  26949542 atttcaactttgatgtgttcattagtttcagaggtaccgacactcgattcggtttcaccggtaatctctataaagctctctctgacaagggaatcc 26949637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 442 - 537
Target Start/End: Original strand, 26635562 - 26635657
Alignment:
Q  442 tctctcataatttcagctatgacgtgttcattagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgaca 537  Q
    ||||| || |||||| ||| ||||||||||||||||||||||| |||||||||| |  ||||||||||||||| ||||| ||||||||||||||||    
T  26635562 tctctaatgatttcacctacgacgtgttcattagtttcaggggcaccgacactcaattcggtttcaccggtaacctctataaagctctttctgaca 26635657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 442 - 537
Target Start/End: Original strand, 26741528 - 26741623
Alignment:
Q  442 tctctcataatttcagctatgacgtgttcattagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgaca 537  Q
    ||||| || |||||| ||| ||||||||||||||||||||||| |||||||||| |  ||||||||||||||| ||||| ||||||||||||||||    
T  26741528 tctctaatgatttcacctacgacgtgttcattagtttcaggggcaccgacactcaattcggtttcaccggtaacctctataaagctctttctgaca 26741623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 429 - 546
Target Start/End: Complemental strand, 27665445 - 27665328
Alignment:
Q  429 tcctcctcccgcctctctcataatttcagctatgacgtgttcattagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctc 528  Q
    |||||||||  ||||||| || |||||| ||  || |||||||||||||||||||||||||||||||||   |||||||||||||| ||||| || ||||    
T  27665445 tcctcctcctccctctcttatgatttcaacttcgatgtgttcattagtttcaggggtaccgacactcgatttggtttcaccggtaacctctataaggctc 27665346  T
Q  529 tttctgacatgggaatcc 546  Q
    |||||||||  |||||||    
T  27665345 tttctgacaaaggaatcc 27665328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 280 - 339
Target Start/End: Original strand, 27214169 - 27214228
Alignment:
Q  280 tatcagtttatgttttgcttttcttacaaatcctgatagcaatacaacactccaacgtac 339  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  27214169 tatcagtttatgttttgctttttttacaaatcctgatagcaacacaacactccaacgtac 27214228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 280 - 339
Target Start/End: Complemental strand, 27235059 - 27235000
Alignment:
Q  280 tatcagtttatgttttgcttttcttacaaatcctgatagcaatacaacactccaacgtac 339  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  27235059 tatcagtttatgttttgctttttttacaaatcctgatagcaacacaacactccaacgtac 27235000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 451 - 537
Target Start/End: Original strand, 26959046 - 26959132
Alignment:
Q  451 atttcagctatgacgtgttcattagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgaca 537  Q
    |||||| ||| ||||| ||||||||||||||||| ||||||||||||  | ||||||||||||| ||||| ||||||||||||||||    
T  26959046 atttcacctacgacgtcttcattagtttcaggggcaccgacactcgattcagtttcaccggtaacctctataaagctctttctgaca 26959132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 160 - 252
Target Start/End: Original strand, 26935999 - 26936091
Alignment:
Q  160 aaaaatcgaaaagtaatctctgtggagatattacaagaagtcacatcgaagcagaatatagaaaatagaaaagaaagccacatgaaaccacat 252  Q
    |||||| ||||||||||||| ||| ||||||||||||||||||||| ||||||| || |||||||| |||| |||| |||| | |||||||||    
T  26935999 aaaaattgaaaagtaatctcggtgcagatattacaagaagtcacatggaagcaggatgtagaaaattgaaaggaaacccacgtaaaaccacat 26936091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 465 - 546
Target Start/End: Original strand, 27229127 - 27229208
Alignment:
Q  465 gtgttcattagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatcc 546  Q
    |||||| ||||||| ||||| || |||||||| | |||||| ||||| ||||||||||| |||||| |||||| ||||||||    
T  27229127 gtgttccttagttttaggggcactgacactcggcacggttttaccggcaatctctacaaggctcttactgacaagggaatcc 27229208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 465 - 546
Target Start/End: Complemental strand, 27698786 - 27698705
Alignment:
Q  465 gtgttcattagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatcc 546  Q
    |||||||| ||||| ||||| || |||||||| | |||||| ||||| ||||||||||| |||||| |||||| ||||||||    
T  27698786 gtgttcatcagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttactgacaagggaatcc 27698705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 465 - 546
Target Start/End: Complemental strand, 27725137 - 27725056
Alignment:
Q  465 gtgttcattagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatcc 546  Q
    |||||| ||||||| ||||| || |||||||| | |||||| ||||| ||||||||||| |||||| |||||| ||||||||    
T  27725137 gtgttccttagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttactgacaagggaatcc 27725056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 465 - 544
Target Start/End: Complemental strand, 27604997 - 27604918
Alignment:
Q  465 gtgttcattagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaat 544  Q
    |||||| ||||||| ||||| || |||||||||  |||||| ||||| ||||||||||| |||||| |||||| ||||||    
T  27604997 gtgttccttagttttaggggcactgacactcgatacggttttaccggcaatctctacaaggctcttactgacaagggaat 27604918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 465 - 546
Target Start/End: Complemental strand, 27611294 - 27611213
Alignment:
Q  465 gtgttcattagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatcc 546  Q
    |||||| | ||||| ||||| || |||||||| | |||||| ||||| ||||||||||| |||||| |||||| ||||||||    
T  27611294 gtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatcc 27611213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 465 - 545
Target Start/End: Original strand, 28781034 - 28781114
Alignment:
Q  465 gtgttcattagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatc 545  Q
    |||||| | ||||| ||||| || |||||||| | |||||| ||||| ||||||||||| |||||| |||||| |||||||    
T  28781034 gtgttcctcagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctcttactgacaagggaatc 28781114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 465 - 545
Target Start/End: Original strand, 28786173 - 28786253
Alignment:
Q  465 gtgttcattagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatc 545  Q
    |||||| | ||||| ||||| || |||||||| | |||||| ||||| ||||||||||| |||||| |||||| |||||||    
T  28786173 gtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatc 28786253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 465 - 545
Target Start/End: Original strand, 28792294 - 28792374
Alignment:
Q  465 gtgttcattagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatc 545  Q
    |||||| | ||||| ||||| || |||||||| | |||||| ||||| ||||||||||| |||||| |||||| |||||||    
T  28792294 gtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatc 28792374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 109
Target Start/End: Original strand, 28093799 - 28093834
Alignment:
Q  74 catttttcttaatacatgtgaaatgaacaaatgact 109  Q
    |||||||||||||||||||||||||| |||||||||    
T  28093799 catttttcttaatacatgtgaaatgatcaaatgact 28093834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 546
Target Start/End: Original strand, 31284190 - 31284264
Alignment:
Q  472 ttagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatcc 546  Q
    ||||||||||||| |  ||||||||    ||||||||||| ||||||||||| |||||| |||||| ||||||||    
T  31284190 ttagtttcaggggaagtgacactcggtatggtttcaccggcaatctctacaaggctcttactgacaagggaatcc 31284264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 500 - 545
Target Start/End: Complemental strand, 27593277 - 27593232
Alignment:
Q  500 cggtttcaccggtaatctctacaaagctctttctgacatgggaatc 545  Q
    |||||||||||| ||||||||||| |||||| |||||| |||||||    
T  27593277 cggtttcaccggcaatctctacaaggctcttactgacaagggaatc 27593232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 500 - 545
Target Start/End: Original strand, 27678876 - 27678921
Alignment:
Q  500 cggtttcaccggtaatctctacaaagctctttctgacatgggaatc 545  Q
    |||||||||||| ||||||||||| |||||| |||||| |||||||    
T  27678876 cggtttcaccgggaatctctacaaggctcttactgacaagggaatc 27678921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 546
Target Start/End: Complemental strand, 27718671 - 27718590
Alignment:
Q  465 gtgttcattagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatcc 546  Q
    |||||| | ||||| ||||| || |||||||| | | |||| ||||| ||||||||||| |||||| |||||| ||||||||    
T  27718671 gtgttcctcagttttaggggcactgacactcggcacagttttaccggaaatctctacaaggctcttactgacaagggaatcc 27718590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 489 - 545
Target Start/End: Complemental strand, 27531465 - 27531409
Alignment:
Q  489 gacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatc 545  Q
    |||||||| | |||||| ||||| ||||||||||| |||||| |||||| |||||||    
T  27531465 gacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatc 27531409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 452 - 544
Target Start/End: Complemental strand, 17993989 - 17993897
Alignment:
Q  452 tttcagctatgacgtgttcattagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaat 544  Q
    ||||||||  || |||||||||||||||||||||||||| ||||||   |||||||||||||||||||| |||||||||||||||| ||||||    
T  17993989 tttcagcttcgatgtgttcattagtttcaggggtaccgatactcgatatggtttcaccggtaatctctataaagctctttctgacaagggaat 17993897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 24 - 117
Target Start/End: Complemental strand, 6213877 - 6213784
Alignment:
Q  24 aatacttgacaagaacacttaaaa-cagttttttctctcattcgcaatattcatttttcttaatacatgtgaaatgaacaaatgactcacttaaa 117  Q
    |||||||||| ||||||||||||| || |||| ||| |||||| | | |||||||||||||||||  |||||||||| |||| ||||||||||||    
T  6213877 aatacttgacgagaacacttaaaatcatttttctctttcattcacta-attcatttttcttaataagtgtgaaatgagcaaaagactcacttaaa 6213784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 116
Target Start/End: Complemental strand, 45464239 - 45464150
Alignment:
Q  27 acttgacaagaacacttaaaa-cagttttttctctcattcgcaatattcatttttcttaatacatgtgaaatgaacaaatgactcacttaa 116  Q
    |||| |||||| || |||||| || ||||||||||||||| |  ||| ||||||||||||||  |||||||||| ||||||||||||||||    
T  45464239 acttaacaagagcatttaaaatcatttttttctctcattcact-tatacatttttcttaatatgtgtgaaatgagcaaatgactcacttaa 45464150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 116
Target Start/End: Original strand, 24589151 - 24589195
Alignment:
Q  74 catttttcttaata--catgtgaaatgaacaaatgactcacttaa 116  Q
    ||||||||||||||  |||||||||||||||||||||||| ||||    
T  24589151 catttttcttaatatacatgtgaaatgaacaaatgactcagttaa 24589195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 39547923 - 39547964
Alignment:
Q  75 atttttcttaatacatgtgaaatgaacaaatgactcacttaa 116  Q
    ||||||||||||| || ||||| |||||||||||||||||||    
T  39547923 atttttcttaataaatatgaaaagaacaaatgactcacttaa 39547964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 10818752 - 10818788
Alignment:
Q  74 catttttcttaatacatgtgaaatgaacaaatgactc 110  Q
    |||||||||| |||| |||||||||||||||||||||    
T  10818752 catttttcttgatacgtgtgaaatgaacaaatgactc 10818788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 23 - 114
Target Start/End: Original strand, 40019838 - 40019929
Alignment:
Q  23 aaatacttgacaagaacacttaaaacagttttt-tctctcattcgcaatattcatttttcttaatacatgtgaaatgaacaaatgactcactt 114  Q
    ||||||||||||||| ||||||||||| ||||| |||||||||| |  ||| |||||||||||||   ||| |||||||||||||||||||||    
T  40019838 aaatacttgacaagagcacttaaaacaatttttctctctcattcac-ttatacatttttcttaatcagtgtaaaatgaacaaatgactcactt 40019929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 115
Target Start/End: Original strand, 42309561 - 42309600
Alignment:
Q  76 tttttcttaatacatgtgaaatgaacaaatgactcactta 115  Q
    |||||||||||| |||||||||||||||| ||||||||||    
T  42309561 tttttcttaatatatgtgaaatgaacaaacgactcactta 42309600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 16040208 - 16040250
Alignment:
Q  75 atttttcttaatacatgtgaaatgaacaaatgactcacttaaa 117  Q
    ||||||||||||| ||||||||||| ||||||||||| |||||    
T  16040208 atttttcttaataaatgtgaaatgagcaaatgactcaattaaa 16040250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 46536471 - 46536512
Alignment:
Q  75 atttttcttaatacatgtgaaatgaacaaatgactcacttaa 116  Q
    |||||||||||||||||||||| || ||||||||||| ||||    
T  46536471 atttttcttaatacatgtgaaacgagcaaatgactcagttaa 46536512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 465 - 546
Target Start/End: Complemental strand, 3714 - 3633
Alignment:
Q  465 gtgttcattagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatcc 546  Q
    |||||| ||||||| ||||| || |||||||| | |||||| ||||| ||||||||||| |||||| |||||| ||||||||    
T  3714 gtgttccttagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttactgacaagggaatcc 3633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 465 - 546
Target Start/End: Complemental strand, 14647 - 14566
Alignment:
Q  465 gtgttcattagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatcc 546  Q
    |||||||| ||||| ||||| || |||||||| | |||||| ||||| ||||||||||| |||||| |||||| ||||||||    
T  14647 gtgttcatcagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttactgacaagggaatcc 14566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 465 - 545
Target Start/End: Complemental strand, 209 - 129
Alignment:
Q  465 gtgttcattagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatc 545  Q
    |||||| ||||||| ||||| || |||||||| | |||||| ||||| ||||||||||| |||||| |||||| |||||||    
T  209 gtgttccttagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctcttactgacaagggaatc 129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 465 - 545
Target Start/End: Original strand, 7420 - 7500
Alignment:
Q  465 gtgttcattagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatc 545  Q
    |||||| ||||||| ||||| || |||||||| | |||||| ||||| ||||||||||| |||||| |||||| |||||||    
T  7420 gtgttccttagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctcttactgacaagggaatc 7500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 27234583 - 27234674
Alignment:
Q  24 aatacttgacaagaacacttaaaacagttttttctctcattcgcaatattcatttttcttaatacatgtgaaatgaacaaatgactcacttaa 116  Q
    ||||||| |||| ||||||||||||| |||| ||| ||||||    ||| ||||||||||||||  |||||||||||||||||||||| ||||    
T  27234583 aatacttaacaaaaacacttaaaacaattttctctgtcattcatt-tatacatttttcttaatatgtgtgaaatgaacaaatgactcagttaa 27234674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 116
Target Start/End: Complemental strand, 45890835 - 45890793
Alignment:
Q  74 catttttcttaatacatgtgaaatgaacaaatgactcacttaa 116  Q
    ||||||||||||||| |||||||||||||||| ||||| ||||    
T  45890835 catttttcttaatacgtgtgaaatgaacaaataactcagttaa 45890793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 49448912 - 49449010
Alignment:
Q  14 gaatgcacgaaatacttgacaagaacacttaaaacagttttt-tctctcattcgcaatattcatttttcttaatacatgtgaaatgaacaaatgactcac 112  Q
    |||||||| ||||||||||||||| ||||||||||  ||||| |||||| ||| |  ||| ||||||||||||||  |||||||||||||||||||| ||    
T  49448912 gaatgcac-aaatacttgacaagagcacttaaaaccatttttctctctccttcact-tatacatttttcttaata--tgtgaaatgaacaaatgactgac 49449007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 12619768 - 12619859
Alignment:
Q  24 aatacttgacaagaacacttaaaacagttttttctctcattcgcaatattcatttttcttaatacatgtgaaatgaacaaatgactcacttaa 116  Q
    |||| ||||||||| ||||||||||| |||| || ||| ||| |  ||| ||||||||||||||  | |||||||||||||| ||||||||||    
T  12619768 aataattgacaagagcacttaaaacatttttctcgctctttcact-tatacatttttcttaataagtatgaaatgaacaaataactcacttaa 12619859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 104
Target Start/End: Complemental strand, 51076393 - 51076358
Alignment:
Q  69 atattcatttttcttaatacatgtgaaatgaacaaa 104  Q
    |||| |||||||||||||||||||||||||||||||    
T  51076393 atatacatttttcttaatacatgtgaaatgaacaaa 51076358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 104
Target Start/End: Complemental strand, 9051953 - 9051924
Alignment:
Q  75 atttttcttaatacatgtgaaatgaacaaa 104  Q
    ||||||||||||||||||||||||||||||    
T  9051953 atttttcttaatacatgtgaaatgaacaaa 9051924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 50714713 - 50714754
Alignment:
Q  75 atttttcttaatacatgtgaaatgaacaaatgactcacttaa 116  Q
    ||||||||||||| || |||||| ||||||||||||||||||    
T  50714713 atttttcttaatatatatgaaataaacaaatgactcacttaa 50714754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 75 - 112
Target Start/End: Original strand, 39416441 - 39416478
Alignment:
Q  75 atttttcttaatacatgtgaaatgaacaaatgactcac 112  Q
    |||||||||||||| |||||||||||||||||||||||    
T  39416441 atttttcttaatacgtgtgaaatgaacaaatgactcac 39416478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 116
Target Start/End: Complemental strand, 42412404 - 42412318
Alignment:
Q  30 tgacaagaacacttaaaacagttttt-tctctcattcgcaatattcatttttcttaatacatgtgaaatgaacaaatgactcacttaa 116  Q
    |||||||| ||||||||||  ||||| |||||||||| |  ||| ||||||||||||||  |||||||||| |||||| |||||||||    
T  42412404 tgacaagagcacttaaaactatttttctctctcattcact-tatacatttttcttaatatgtgtgaaatgagcaaatggctcacttaa 42412318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 117
Target Start/End: Complemental strand, 15559157 - 15559065
Alignment:
Q  24 aatacttgacaagaacacttaaaa-cagttttttctctcattcgcaatattcatttttcttaatacatgtgaaatgaacaaatgactcacttaaa 117  Q
    |||||||||||||||||||||||| || |||| |||||| ||| | | || |||||||||||||| ||||| ||||||||||   ||||||||||    
T  15559157 aatacttgacaagaacacttaaaatcatttttgtctctccttcacta-atacatttttcttaataaatgtg-aatgaacaaaatgctcacttaaa 15559065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 27152992 - 27153033
Alignment:
Q  75 atttttcttaatacatgtgaaatgaacaaatgactcacttaa 116  Q
    ||||||||||||| |||| |||||||||||||||||||||||    
T  27152992 atttttcttaatatatgtaaaatgaacaaatgactcacttaa 27153033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 465 - 545
Target Start/End: Complemental strand, 13924 - 13844
Alignment:
Q  465 gtgttcattagtttcaggggtaccgacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatc 545  Q
    |||||| | ||||| ||||| || |||||||| | |||||| ||||| ||||||||||| |||||| |||||| |||||||    
T  13924 gtgttcctcagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctcttactgacaagggaatc 13844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 489 - 545
Target Start/End: Complemental strand, 4939 - 4883
Alignment:
Q  489 gacactcgacgcggtttcaccggtaatctctacaaagctctttctgacatgggaatc 545  Q
    |||||||| | |||||| ||||| ||||||||||| |||||| |||||| |||||||    
T  4939 gacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatc 4883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 116
Target Start/End: Complemental strand, 39183605 - 39183563
Alignment:
Q  74 catttttcttaatacatgtgaaatgaacaaatgactcacttaa 116  Q
    ||||||||||||||  ||||||||| |||||||||||||||||    
T  39183605 catttttcttaatatgtgtgaaatggacaaatgactcacttaa 39183563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 13135876 - 13135909
Alignment:
Q  77 ttttcttaatacatgtgaaatgaacaaatgactc 110  Q
    |||||||||||| |||||||||||||||||||||    
T  13135876 ttttcttaatacgtgtgaaatgaacaaatgactc 13135909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University