View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11080_low_1 (Length: 766)
Name: NF11080_low_1
Description: NF11080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11080_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 593; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 127 - 755
Target Start/End: Original strand, 4861983 - 4862611
Alignment:
| Q |
127 |
aatgtttttgcatttcaataaatgtgttgtacgattccataaatgtggtcattaaaaccaactaaatcacactcatttggctaactgtggcttgatttga |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4861983 |
aatgtttttgcatttcaataaatgtgttgtacgattccataaatgtggtcattaaaaccatctaaatcacactcatttggctaactgtggcttgatttga |
4862082 |
T |
|
| Q |
227 |
tatggtactaaatttgatacgttcttcttattgttaagattttataaattgattcttacaaactaatattagacattatcactttaaaatttgagactgg |
326 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4862083 |
tatggtactagatttgatacgttcttcttattgttaagattttataaattgattcttacaaactaatattagacattatcactttaaaatttgagactgg |
4862182 |
T |
|
| Q |
327 |
agtttttcctggaacatatcttcaatccatcatgtgtacaacgtcaacaaattataaacgattaaattacacactatagtaatctttataaaacatacat |
426 |
Q |
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|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4862183 |
agtttttcctggaacatatcttcaatgcatcatgtgtgcaacgtcaacaaattataaacgattaaattacacactatagtaatctttataaaacatacat |
4862282 |
T |
|
| Q |
427 |
ttcaaaattttaagatgagtgacaactatctatcttgctcttggattcccgatctcagaaaacaccgtagcattaagtagatgctggtcttctgtactag |
526 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
4862283 |
ttcaaaattttaggatgagtgacaactatctatcttgctcttggattcccgatctcagaaaacaccgtagcataaagtagatgctgatcttctgtactag |
4862382 |
T |
|
| Q |
527 |
ctgaaatggtgcttaccttgcttgtttgagacccgtaatcatcactgctactcgtgaaacgaacatcacttccatcttcacttgtaaactgtgacacttg |
626 |
Q |
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| T |
4862383 |
ctgaaatggtgcttaccttgcttgtttgagacccgtaatcatcactgctactcgtgaaacaaacatcacttccatcttcacttgtaaactgtgacacttg |
4862482 |
T |
|
| Q |
627 |
ttgtctttcctcacttttttccttttcatgagtccaaccagacttagtatcttcctcactcatctccaactgcaatgcaaactctaaagctccaacaaca |
726 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4862483 |
ttgtctttcctcacttttttccttttcatgagtccaaccagacttagtatcttcctcactcatctccaactgcaatgcaaactctaaagctccaacaaca |
4862582 |
T |
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| Q |
727 |
tcactcattgacattcgttgatgtccatc |
755 |
Q |
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|||||||||||||||||||||| |||||| |
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| T |
4862583 |
tcactcattgacattcgttgatttccatc |
4862611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 414 - 755
Target Start/End: Complemental strand, 4698925 - 4698584
Alignment:
| Q |
414 |
ataaaacatacatttcaaaattttaagatgagtgacaactatctatcttgctcttggattcccgatctcagaaaacaccgtagcattaagtagatgctgg |
513 |
Q |
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|||||| |||||||| |||||||| |||||||| || |||||||| ||||||||||||||| ||||||||||||||||| ||| || | | | || |
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| T |
4698925 |
ataaaatatacatttggaaattttagaatgagtgagaattatctatcgtgctcttggattcccaatctcagaaaacaccgttgcagaaaacaaaggttga |
4698826 |
T |
|
| Q |
514 |
tcttctgtactagctgaaatggtgcttaccttgcttgtttgagacccgtaatcatcactgctactcgtgaaacgaacatcacttccatcttcacttgtaa |
613 |
Q |
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| T |
4698825 |
tcttcagtgctggctgaattggtgcttactttgcttgtttgagtctcataatcatcactgctactagtgaaacgaatatcacttccatcttcacttataa |
4698726 |
T |
|
| Q |
614 |
actgtgacacttgttgtctttcctcacttttttccttttcatgagtccaaccagacttagtatcttcctcactcatctccaactgcaatgcaaactctaa |
713 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||| | |||||||| |||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
4698725 |
actgcgacacttgttgtcttttctcacttttttccttttcattattccaaccaaacttagtatcctcctcacttatctccaactgcaatgcaaactctaa |
4698626 |
T |
|
| Q |
714 |
agctccaacaacatcactcattgacattcgttgatgtccatc |
755 |
Q |
| |
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||||||||||||||||||||| ||||| ||||||| |||||| |
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| T |
4698625 |
agctccaacaacatcactcatcgacatccgttgatttccatc |
4698584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 4859453 - 4859571
Alignment:
| Q |
18 |
aagtttatgtccttatttttattttatgttaataaacttattgaggtgctgcagatgcttgctgatgaatttgagatgtcaacatagtttgaggtctttt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4859453 |
aagtttatgtccttatttttattttatgttaataaacttattgaggtgctgcagatgcttgctgatgaatttgagatgtcaacatagtttgaggtctttt |
4859552 |
T |
|
| Q |
118 |
ctgcaatgtaatgtttttg |
136 |
Q |
| |
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||||||||||||||||||| |
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| T |
4859553 |
ctgcaatgtaatgtttttg |
4859571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 553 - 755
Target Start/End: Complemental strand, 4785428 - 4785229
Alignment:
| Q |
553 |
tgagacccgtaatcatcactgctactcgtgaaacgaacatcacttccatcttcacttgtaaactgtgacacttgttgtctttcctcacttttttcctttt |
652 |
Q |
| |
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|||||||| || |||||||| ||||| ||||||| | |||||| ||||| ||| ||||| ||||||| || | |||| |||||| |||||||||| |
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| T |
4785428 |
tgagacccatagtcatcactactacttgtgaaacacatatcactcccatcatca---gtaaaatgtgacaattctatcctttgctcactcttttcctttt |
4785332 |
T |
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| Q |
653 |
catgagt-ccaaccagacttagtatcttcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatgtc |
751 |
Q |
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| | || ||||| || |||| |||| |||||||||||||| |||||||||||||||||||| | |||| ||||||||||| ||||||||||||| || |
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| T |
4785331 |
ccttggtaccaacaag-cttactatcctcctcactcatctctaactgcaatgcaaactctaatgtcgcaaccacatcactcatcgacattcgttgatttc |
4785233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 553 - 755
Target Start/End: Complemental strand, 4817857 - 4817658
Alignment:
| Q |
553 |
tgagacccgtaatcatcactgctactcgtgaaacgaacatcacttccatcttcacttgtaaactgtgacacttgttgtctttcctcacttttttcctttt |
652 |
Q |
| |
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|||||||| || |||||||| ||||| ||||||| | |||||| ||||| ||| ||||| ||||||| || | |||| |||||| |||||||||| |
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| T |
4817857 |
tgagacccatagtcatcactactacttgtgaaacacatatcactcccatcatca---gtaaaatgtgacaattctatcctttgctcactcttttcctttt |
4817761 |
T |
|
| Q |
653 |
catgagt-ccaaccagacttagtatcttcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatgtc |
751 |
Q |
| |
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| | || ||||| || |||| |||| |||||||||||||| |||||||||||||||||||| | |||| ||||||||||| ||||||||||||| || |
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| T |
4817760 |
ccttggtaccaacaag-cttactatcctcctcactcatctctaactgcaatgcaaactctaatgtcgcaaccacatcactcatcgacattcgttgatttc |
4817662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 414 - 499
Target Start/End: Complemental strand, 4817996 - 4817911
Alignment:
| Q |
414 |
ataaaacatacatttcaaaattttaagatgagtgacaactatctatcttgctcttggattcccgatctcagaaaacaccgtagcat |
499 |
Q |
| |
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|||||| ||||||| ||||||||| | |||| ||| |||||||| |||| ||||||| || |||||||||||||||||||||| |
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| T |
4817996 |
ataaaatatacattcgaaaattttagaaatagtggcaaatatctatcgtgcttttggatttccaatctcagaaaacaccgtagcat |
4817911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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