View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11080_low_10 (Length: 371)
Name: NF11080_low_10
Description: NF11080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11080_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 361
Target Start/End: Complemental strand, 8042501 - 8042160
Alignment:
| Q |
20 |
atccaggcaacaaagtggaagtgagcaacgacagaggcggcggcatatactgctcatggtccaccgccaccatcgtgaggtgggtttcgtctgacaaatt |
119 |
Q |
| |
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|||| |||||||||||||||||||||| |||| ||| |||||||||||||||||||| ||||||||||||||| | |||||| || || |||||||| |
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| T |
8042501 |
atcccggcaacaaagtggaagtgagcatcgaccatggcatcggcatatactgctcatggttcaccgccaccatcgtcaagtgggtctcctccgacaaatt |
8042402 |
T |
|
| Q |
120 |
actggtcgaatacgatgacatggacgtgaagccaacagttgtcggtcttcatctgctccgaccagtgcccacaccggagagcgatgattgggaagtaaag |
219 |
Q |
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||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||| || || || |||||||||||||||||||| ||| |
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| T |
8042401 |
actggtcgaatacgatgacgtggacgtgaagccaacaactgtcggtcttcatcagctccgaccagtacctacgccagagagcgatgattgggaagtgaag |
8042302 |
T |
|
| Q |
220 |
atcggcgacaaggtggaggcgttccgaaaacaccggtggttggaaggccgcgttaatgaagatttagggaatggaagttttcgtgtgtgttttacagact |
319 |
Q |
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|||||||||||||||||||| ||||| ||||| ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8042301 |
atcggcgacaaggtggaggctttccggaaacaacggtggtgggaaggccgcgttattgaagatttagggaatggaagtttccgtgtgtgttttacagact |
8042202 |
T |
|
| Q |
320 |
cagaagagattgtgtttccaaaagaccttcttagggttcatc |
361 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8042201 |
cggaagagattgtgtttccaaaagaccttcttagggttcatc |
8042160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 25 - 361
Target Start/End: Complemental strand, 9140119 - 9139783
Alignment:
| Q |
25 |
ggcaacaaagtggaagtgagcaacgacagaggcggcggcatatactgctcatggtccaccgccaccatcgtgaggtgggtttcgtctgacaaattactgg |
124 |
Q |
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|||||||||||||||||||||| |||| | ||| ||||||||| ||||||||||| | ||||||||||| | |||||| | || || |||| |||||||| |
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| T |
9140119 |
ggcaacaaagtggaagtgagcatcgaccgcggcagcggcatatcctgctcatggttccccgccaccatcctcaggtggttctcctccgacatattactgg |
9140020 |
T |
|
| Q |
125 |
tcgaatacgatgacatggacgtgaagccaacagttgtcggtcttcatctgctccgaccagtgcccacaccggagagcgatgattgggaagtaaagatcgg |
224 |
Q |
| |
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|| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||| |||||||||| |||||||| |
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| T |
9140019 |
tccaatacgatgacatggatgtgaagccaacagttgtcggtcttcatcagctccgaccagtgcccacgccggtgagcgattattgggaagtgaagatcgg |
9139920 |
T |
|
| Q |
225 |
cgacaaggtggaggcgttccgaaaacaccggtggttggaaggccgcgttaatgaagatttagggaatggaagttttcgtgtgtgttttacagactcagaa |
324 |
Q |
| |
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||||||||||||||| ||||||||||||||||||| |||||||||||||| | |||||||||||||||||| |||| |||||||||||||||||| ||| |
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| T |
9139919 |
cgacaaggtggaggcattccgaaaacaccggtggtgggaaggccgcgttagcgcagatttagggaatggaagatttcttgtgtgttttacagactcggaa |
9139820 |
T |
|
| Q |
325 |
gagattgtgtttccaaaagaccttcttagggttcatc |
361 |
Q |
| |
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||||| |||||||||||||||||||||||| |||||| |
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| T |
9139819 |
gagatggtgtttccaaaagaccttcttaggattcatc |
9139783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 20 - 361
Target Start/End: Original strand, 8410130 - 8410471
Alignment:
| Q |
20 |
atccaggcaacaaagtggaagtgagcaacgacagaggcggcggcatatactgctcatggtccaccgccaccatcgtgaggtgggtttcgtctgacaaatt |
119 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| | | || ||||||||| ||||||||| ||| ||||| ||| | |||||| | || || |||||||| |
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| T |
8410130 |
atccgggcaacaaagtggaagtgagcaacgactgcagtggtggcatataccgctcatggttcacagccacaatcatcaggtggttctcctccgacaaatt |
8410229 |
T |
|
| Q |
120 |
actggtcgaatacgatgacatggacgtgaagccaacagttgtcggtcttcatctgctccgaccagtgcccacaccggagagcgatgattgggaagtaaag |
219 |
Q |
| |
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||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||| |||||||||||||| ||| |
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| T |
8410230 |
actggtcgaattcgatgacgaggacgtgaagccaacagttgtcggtcttcatcagctccgaccagtgcccacgctggagattgatgattgggaagtgaag |
8410329 |
T |
|
| Q |
220 |
atcggcgacaaggtggaggcgttccgaaaacaccggtggttggaaggccgcgttaatgaagatttagggaatggaagttttcgtgtgtgttttacagact |
319 |
Q |
| |
|
||||||||||| |||||||||||||| |||||| |||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8410330 |
atcggcgacaaagtggaggcgttccggaaacacaggtggtgggaaggccgtgttagcgaagatttagggaatggaagttttcgtgtgtgttttacagact |
8410429 |
T |
|
| Q |
320 |
cagaagagattgtgtttccaaaagaccttcttagggttcatc |
361 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8410430 |
caggagagattgtgtttccaaaagaccttcttagggttcatc |
8410471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 28 - 266
Target Start/End: Complemental strand, 8037014 - 8036776
Alignment:
| Q |
28 |
aacaaagtggaagtgagcaacgacagaggcggcggcatatactgctcatggtccaccgccaccatcgtgaggtgggtttcgtctgacaaattactggtcg |
127 |
Q |
| |
|
|||||||||||||||| || |||| | || |||||||||||||||||||||| ||||||||||||||| ||||||||||| || |||||||||||||||| |
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| T |
8037014 |
aacaaagtggaagtgaacatcgaccgtggtggcggcatatactgctcatggttcaccgccaccatcgtcaggtgggtttcctccgacaaattactggtcg |
8036915 |
T |
|
| Q |
128 |
aatacgatgacatggacgtgaagccaacagttgtcggtcttcatctgctccgaccagtgcccacaccggagagcgatgattgggaagtaaagatcggcga |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||| || ||||| |||||||||||||||||||| |||||| | || |
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| T |
8036914 |
aatacgatgacatggacgtgaagccaacagatgttggtcttcatcagctccgaccagtacctacaccagagagcgatgattgggaagtgaagatcaggga |
8036815 |
T |
|
| Q |
228 |
caaggtggaggcgttccgaaaacaccggtggttggaagg |
266 |
Q |
| |
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||| |||||||||||||| |||||| |||||| |||||| |
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| T |
8036814 |
caaagtggaggcgttccggaaacacaggtggtgggaagg |
8036776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 8415932 - 8416063
Alignment:
| Q |
18 |
caatccaggcaacaaagtggaagtgagcaacgacagaggcggcggcatatactgctcatggtccaccgccaccatcgtgaggtgggtttcgtctgacaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8415932 |
caatccaggcaacaaagtggaagtgagcaacgacagaggcggcggcatatactgctcatggtccaccgccaccatcgtcaggtgggtttcgtctgacaaa |
8416031 |
T |
|
| Q |
118 |
ttactggtcgaatacgatgacatggacgtgaa |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
8416032 |
ttactggtcgaatacgatgacatggacgtgaa |
8416063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 8416064 - 8416108
Alignment:
| Q |
317 |
actcagaagagattgtgtttccaaaagaccttcttagggttcatc |
361 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8416064 |
actcagaagagattgtgtttccaaaagaccttcttagggttcatc |
8416108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 314
Target Start/End: Complemental strand, 43145653 - 43145486
Alignment:
| Q |
147 |
gaagccaacagttgtcggtcttcatctgctccgaccagtgcccacaccggagagcgatgattgggaagtaaagatcggcgacaaggtggaggcgttccga |
246 |
Q |
| |
|
|||||||| ||||||| |||||| | |||||||||||||| ||||||||||||||||||||| | | | || |||||||||||| || || ||| | |
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|
| T |
43145653 |
gaagccaatagttgtccatcttcaccaactccgaccagtgcctacaccggagagcgatgattggcatttgaggaccggcgacaaggtagaagccttctgg |
43145554 |
T |
|
| Q |
247 |
aaacaccggtggttggaaggccgcgttaatgaagatttagggaatggaagttttcgtgtgtgttttac |
314 |
Q |
| |
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||||| ||||||| ||| || || | | ||||||||||||||||| |||||||||| |||||| |
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|
| T |
43145553 |
aaacagcggtggtgggagggatatgtcagcaaggatttagggaatggaaggtttcgtgtgtattttac |
43145486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 322 - 361
Target Start/End: Complemental strand, 8036770 - 8036731
Alignment:
| Q |
322 |
gaagagattgtgtttccaaaagaccttcttagggttcatc |
361 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
8036770 |
gaagagatggtgtttccaaaagaccttcttagggttcatc |
8036731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 239
Target Start/End: Complemental strand, 8360186 - 8360152
Alignment:
| Q |
205 |
gattgggaagtaaagatcggcgacaaggtggaggc |
239 |
Q |
| |
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||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8360186 |
gattgggaagtaaagattggcgacaaggtggaggc |
8360152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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