View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11080_low_11 (Length: 361)
Name: NF11080_low_11
Description: NF11080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11080_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 122 - 348
Target Start/End: Complemental strand, 44627560 - 44627334
Alignment:
| Q |
122 |
gtccaatctatttaactcaacctcatattcttcaagctcaatgaacaagtaacgtaagggcatagttgtgagatctcttgatgtcattatagttctgacc |
221 |
Q |
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| T |
44627560 |
gtccaatctatttaactcaacctcatattcttcaagctctatgaacaagtgacgcaagggcatagttgtgagatctcttgatgtcattatagttctgacc |
44627461 |
T |
|
| Q |
222 |
ttgtgctgccatttcctactcaaacttctcaaaactttgtagaccaagtctacctacattaggaatccttttccccaatgaagcaagatggttaacaaga |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44627460 |
ttgtgctgccatttcctactcaaacttctcaaaactttgtagaccaagtctacctacattaggaatccttttccccaatgaagcaagatggttaacaaga |
44627361 |
T |
|
| Q |
322 |
tcataaaaccgcatttgcatatcgtct |
348 |
Q |
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||||||||||||||||||||||||||| |
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| T |
44627360 |
tcataaaaccgcatttgcatatcgtct |
44627334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 44627729 - 44627644
Alignment:
| Q |
1 |
ctttgataaccaagttcatctcttcttcgtcgtcactgtcaacttcttcatcatcctttcttgacgacaccactgcactgccacta |
86 |
Q |
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|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44627729 |
ctttgataaccaagttcatctcttcttcttcatcactgtcaacttcttcatcatcctttcttgacgacgccactgcactgccacta |
44627644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 122 - 344
Target Start/End: Complemental strand, 26080792 - 26080574
Alignment:
| Q |
122 |
gtccaatctatttaactcaacctcatattcttcaagctcaatgaacaagtaacgtaagggcatagttgtgagatctcttgatgtcattatagttctgacc |
221 |
Q |
| |
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|||||| |||||||||||| ||||| ||||||||||| ||||||| || |||| ||||||||| || |||| ||||| || |||||| ||||||| |
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| T |
26080792 |
gtccaacctatttaactcagtctcatgctcttcaagctctctgaacaatgaaactaagagcatagttgggaaatctattgatttcgttatagctctgacc |
26080693 |
T |
|
| Q |
222 |
ttgtgctgccatttcctactcaaacttctcaaaactttgtagaccaagtctacctacattaggaatccttttccccaatgaagcaagatggttaacaaga |
321 |
Q |
| |
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|||||| |||||||| ||||||||| ||||||||||||| ||||| | || ||||||||||| |||| ||||| ||||||||||| ||||||| | |
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| T |
26080692 |
ttgtgccgccatttcttactcaaacatctcaaaactttgctaaccaa----atcttcattaggaatctttttacccaacgaagcaagatgattaacaaca |
26080597 |
T |
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| Q |
322 |
tcataaaaccgcatttgcatatc |
344 |
Q |
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||||||||||||||||||||||| |
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| T |
26080596 |
tcataaaaccgcatttgcatatc |
26080574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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