View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11080_low_12 (Length: 350)
Name: NF11080_low_12
Description: NF11080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11080_low_12 |
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| [»] scaffold0045 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 14125571 - 14125902
Alignment:
| Q |
1 |
cttcccagtgtcacatggagtccatgcagttaggcttggaaatgaagcttccatctcacaaaccatcaaagtcaaacctggcacaatgtatgctctaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14125571 |
cttcccagtgtcacatggagtccatgcagttaggcttggaaatgaagcatccatctcacaaaccatcaaagtcaaacctggcacaatgtatgctctaata |
14125670 |
T |
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| Q |
101 |
ttaggagccacaagaacttgtgctcaagatgaagttttgagaatctcagtgcctccacaatctggtgaagttcctttacaaacactttatagcctcaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
14125671 |
ttaggagccacaagaacttgtgctcaagatgaggttttgagaatctcagtgcctccacaatctggtgaagttcctttgcaaacactttatagcctcaatg |
14125770 |
T |
|
| Q |
201 |
gtgatgttattgcttggggattcaaggctagttcttctttggttaaagttacattccataatcctggtattcaagaagatcctacttgtggtccactttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
14125771 |
gtgatgttattgcttggggattcaaggctagttcttctttggttaaagttacattccataaccctggtattcaagaagatcctacttgtggtccactttt |
14125870 |
T |
|
| Q |
301 |
ggatgctgttgctattagagaattctatcctc |
332 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
14125871 |
ggatgctgttgctattagagaattctatcctc |
14125902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 14129420 - 14129756
Alignment:
| Q |
1 |
cttcccagtgtcacatggagtccatgcagttaggcttggaaatgaagcttccatctcacaaaccatcaaagtcaaacctggcacaatgtatgctctaatc |
100 |
Q |
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|||||||||||||||||| || ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||| ||||||| ||||| |
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| T |
14129420 |
cttcccagtgtcacatggtgttcatgctgttaggcttggaaatgaagcatccatttcacaaaccatcaaagtcaaacctggtacatggtatgctataatc |
14129519 |
T |
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| Q |
101 |
ttaggagccacaagaacttgtgctcaagatgaagttttgagaatctcagtgcctccacaatctggtgaagttcctttacaaacactttatagcctcaatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
14129520 |
ttaggagccacaagaacttgtgctcaagatgaagttttgagaatctcagtgcctctacaatctggtgatgttcctttgcaaacactttatagcctcaatg |
14129619 |
T |
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| Q |
201 |
gtgatgttattgcttggggattcaaggctagttcttctttggttaaagttacattccataatcctggtattcaagaagatcctacttgtggtccactttt |
300 |
Q |
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||||||||||||||||||||||||||||||| |||||||| | ||||||||| |||||||| |||||||| |||||||| |||||||||||||||||||| |
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| T |
14129620 |
gtgatgttattgcttggggattcaaggctagatcttcttttgctaaagttaccttccataaccctggtatgcaagaagaccctacttgtggtccactttt |
14129719 |
T |
|
| Q |
301 |
ggatgctgttgctattagagaattctatcctctgatg |
337 |
Q |
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||||||||||||||||||||| ||||| |||| |||| |
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| T |
14129720 |
ggatgctgttgctattagagagttctaccctccgatg |
14129756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 14112523 - 14112859
Alignment:
| Q |
1 |
cttcccagtgtcacatggagtccatgcagttaggcttggaaatgaagcttccatctcacaaaccatcaaagtcaaacctggcacaatg-tatgctctaat |
99 |
Q |
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||||||||||||||||||||| ||||||||||| ||||||||||| || |||||||| ||||||||||| ||||||||||| ||||| ||||||||||| |
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| T |
14112523 |
cttcccagtgtcacatggagttcatgcagttagacttggaaatgatgcctccatctcccaaaccatcaaggtcaaacctggt-caatggtatgctctaat |
14112621 |
T |
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| Q |
100 |
cttaggagccacaagaacttgtgctcaagatgaagttttgagaatctcagtgcctccacaatctggtgaagttcctttacaaacactttatagcctcaat |
199 |
Q |
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|||||||| | || |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
14112622 |
attaggagcatctaggacttgtgctcaagatgaagtattgagaatctcagtacctccacaatctggtgaagttcctttgcaaacactttatagcctcaat |
14112721 |
T |
|
| Q |
200 |
ggtgatgttattgcttggggattcaaggctagttcttctttggttaaagttacattccataatcctggtattcaagaagatcctacttgtggtccacttt |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||| | | ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
14112722 |
ggtgatgttattgcttggggattcaaggctagttcttctcttgcaaaagttacatttcataaccctggtgttcaagaagatcctacttgtggtccacttt |
14112821 |
T |
|
| Q |
300 |
tggatgctgttgctattagagaattctatcctctgatg |
337 |
Q |
| |
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|||||||||||||||||||||| ||||| |||| |||| |
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| T |
14112822 |
tggatgctgttgctattagagagttctaccctccgatg |
14112859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 111 - 321
Target Start/End: Complemental strand, 56393 - 56183
Alignment:
| Q |
111 |
caagaacttgtgctcaagatgaagttttgagaatctcagtgcctccacaatctggtgaagttcctttacaaacactttatagcctcaatggtgatgttat |
210 |
Q |
| |
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||||||||||||| |||||||||||||| |||||||| |||||||||||| | ||||| ||||| | |||||| | ||||| ||||||||||||||||| |
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| T |
56393 |
caagaacttgtgcacaagatgaagttttaagaatctccgtgcctccacaaaccggtgatgttccgctgcaaacattgtatagtctcaatggtgatgttat |
56294 |
T |
|
| Q |
211 |
tgcttggggattcaaggctagttcttctttggttaaagttacattccataatcctggtattcaagaagatcctacttgtggtccacttttggatgctgtt |
310 |
Q |
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||||||||||||||| |||| ||| | | | |||||| || || ||||| |||||| ||||||||||||||||||||||||||||| | ||||| || |
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| T |
56293 |
tgcttggggattcaaagctacatctaatgttgctaaagtgacttttcataaccctggtgttcaagaagatcctacttgtggtccacttcttgatgcaatt |
56194 |
T |
|
| Q |
311 |
gctattagaga |
321 |
Q |
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||||| ||||| |
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| T |
56193 |
gctatcagaga |
56183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 318
Target Start/End: Original strand, 2285851 - 2285912
Alignment:
| Q |
257 |
cataatcctggtattcaagaagatcctacttgtggtccacttttggatgctgttgctattag |
318 |
Q |
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|||||||||||| || ||||||||||| |||||||||| ||| | ||| |||||||| |||| |
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| T |
2285851 |
cataatcctggtgttgaagaagatcctgcttgtggtcctcttattgattctgttgctcttag |
2285912 |
T |
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