View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11080_low_15 (Length: 256)
Name: NF11080_low_15
Description: NF11080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11080_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 52186596 - 52186830
Alignment:
| Q |
19 |
ccatccatccatccaacttggccctcttctatgtttctactctattaggactttcaacttcttttctcttgactttgcccttaggttaaatttcttcatc |
118 |
Q |
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| T |
52186596 |
ccatccatccatccaacttggccctcttctatgtttctactctattaggactttcaacttcttttctcttgacttggcccttaggttaaatttcttcatc |
52186695 |
T |
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| Q |
119 |
ggttagttacatgtttgctggtagaattgtttgtttattggacaatggcgagacgaaggcggtgtaagaaggaacctaaattagacaacaaaaatgaaga |
218 |
Q |
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| T |
52186696 |
ggttagttacatgtttgctggtagaattgtttgtttattagacaattgcgagacgaaggcggtgtaagaaggaacctaaattagacaacaaaaatgaaga |
52186795 |
T |
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| Q |
219 |
cattatcagtgacttgactgattctgtgctcctcc |
253 |
Q |
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| T |
52186796 |
cattatcagtgacttgactgattctgttctcctcc |
52186830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 187
Target Start/End: Original strand, 38988978 - 38989066
Alignment:
| Q |
99 |
ttaggttaaatttcttcatcggttagttacatgtttgctggtagaattgtttgtttattggacaatggcgagacgaaggcggtgtaaga |
187 |
Q |
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| T |
38988978 |
ttaggttagattttttgatcagttagttacacatttgcttgtagatttgtttgtttatgagacaatggccagacgaaggcagtgtaaga |
38989066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 235
Target Start/End: Complemental strand, 43875352 - 43875319
Alignment:
| Q |
202 |
gacaacaaaaatgaagacattatcagtgacttga |
235 |
Q |
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| T |
43875352 |
gacaacaaaaatgaagacattatcagtaacttga |
43875319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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