View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11080_low_19 (Length: 227)
Name: NF11080_low_19
Description: NF11080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11080_low_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 206
Target Start/End: Original strand, 44627708 - 44627901
Alignment:
| Q |
13 |
gagatgaacttggttatcaaagatcttttcaagcttctaaagaaaaacaagaagtccttcaagcaaggagagaaggaacgccagaagagaggatcctctt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
44627708 |
gagatgaacttggttatcaaagatcttttcaagcttctaaagaaaaacaagaagtccttcaagcaaggagagaaggagcgccggaagagaggatcctctt |
44627807 |
T |
|
| Q |
113 |
ctacacgtgcaatgccctgattcaaaaactactctttgtaagtgccttttttaacttgttctacacctgaaacttcacatacatgagtttgaag |
206 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44627808 |
ctacacgtgcaacgccctgattcaaaaactactctttgtaagtgccttttttaacttgttctacacctgaaacttcacatacatgagtttgaag |
44627901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 26080833 - 26080955
Alignment:
| Q |
17 |
tgaacttggttatcaaagatcttttcaagcttctaaagaaaaacaagaagtccttcaagcaaggagagaaggaacgccagaagagaggatcctcttctac |
116 |
Q |
| |
|
||||||||||| | ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||| | | ||| ||||||||||||||| |
|
|
| T |
26080833 |
tgaacttggttttgaaagacctttccaagcttctaaagaaaaacaagaagtccttcaagcaaggagagaaagaacacagggagaaaggatcctcttctac |
26080932 |
T |
|
| Q |
117 |
acgtgcaatgccctgattcaaaa |
139 |
Q |
| |
|
||| ||||| ||||||||||| |
|
|
| T |
26080933 |
gcgtacaatgttctgattcaaaa |
26080955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 2850876 - 2850815
Alignment:
| Q |
130 |
tgattcaaaaactactctttgtaagtgccttttttaacttgttctacacctgaaacttcaca |
191 |
Q |
| |
|
||||||||||| ||||| ||||||||| |||| |||||||||||||| ||||||||||||| |
|
|
| T |
2850876 |
tgattcaaaaagtactccttgtaagtgttttttctaacttgttctacagctgaaacttcaca |
2850815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 2902908 - 2902847
Alignment:
| Q |
130 |
tgattcaaaaactactctttgtaagtgccttttttaacttgttctacacctgaaacttcaca |
191 |
Q |
| |
|
||||||||||| ||||| ||||||||| |||| |||||||||||||| ||||||||||||| |
|
|
| T |
2902908 |
tgattcaaaaagtactccttgtaagtgttttttctaacttgttctacagctgaaacttcaca |
2902847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University