View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11080_low_20 (Length: 212)
Name: NF11080_low_20
Description: NF11080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11080_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 3e-96; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 14 - 199
Target Start/End: Original strand, 3563252 - 3563437
Alignment:
| Q |
14 |
cacagaccacaaactagcagggggaccaatatacgcaccgtggtcacaatgctgcgcacatctagatatgtatgaatttgtacattattgattagcctat |
113 |
Q |
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| T |
3563252 |
cacacaccacaaactagcagggggaccaatatacgcaccgtggtcacaatgctgcgcacatctagatatgtatgaatttgtacattattgattagcctat |
3563351 |
T |
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| Q |
114 |
ctagaaatcatatttgacaatttttattggatggaagacgtatttaatgatattatcatcacatactttggatatttgatatattt |
199 |
Q |
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| T |
3563352 |
ctagaaatcatatttgacaatttttattggatggaagacgtatttaatgatattatcatcacatactttggatatttgaaatattt |
3563437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 80 - 199
Target Start/End: Original strand, 3568964 - 3569083
Alignment:
| Q |
80 |
tatgtatgaatttgtacattattgattagcctatctagaaatcatatttgacaatttttattggatggaagacgtatttaatgatattatcatcacatac |
179 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3568964 |
tatgtatgaatttgtacattattgattagcctatccagaaatctaatttgacaaattttattggatggaagacgtatttaatgatattatcattacatac |
3569063 |
T |
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| Q |
180 |
tttggatatttgatatattt |
199 |
Q |
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| T |
3569064 |
tttggatatttgatatattt |
3569083 |
T |
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