View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11080_low_5 (Length: 539)
Name: NF11080_low_5
Description: NF11080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11080_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 21 - 494
Target Start/End: Complemental strand, 30886161 - 30885688
Alignment:
| Q |
21 |
gtatatcaccaccattttcctaaaatggtagcataacatgataacattaaatgatccccacttcttaaaatgatagcatagcatcaaatgatcggtcccc |
120 |
Q |
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| T |
30886161 |
gtatatcaccaccattttcctaaaatggtagcataacatgataacattaaatgatccccacttcctaaaatgatagcatagcatcaaatgatcggtcccc |
30886062 |
T |
|
| Q |
121 |
cctaaatataaaaacaaaagtttacaatcatgcataactcgaattaatgtagacaaccaaaaatagcacaatgatatgcaatgcaattggtttatgatat |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30886061 |
cctaaatataaaaacaaaagtttacaatcatgcataactcgaattaatgtagacaaccaaaaatagcacaatgatatgcaatacaattggtttatgatat |
30885962 |
T |
|
| Q |
221 |
caccacgaggctagtctaatagtcgtcttcaatctcgttttcatgatgttttcgtattgtgttacgggtcatgtttctgaccgtaaaaatcacaaccaat |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
30885961 |
caccacgaggctagtctaatagtcgtcttcaatctcgttttcatgatgtttttgtattgtgttacgggtcatgttcctgaccgtaaaaatcacaaccaat |
30885862 |
T |
|
| Q |
321 |
gggtctaacagttcagcagacattaagaccacatgggtgtcactccaaatgataagcatgtaaaaaagtcgtgaatcatatgcagaatattcagtttgcc |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30885861 |
gggtctaacagttcagcagacattaagaccacatgggtgtcactccaaatgataagcatgtaaaaaagtcgtgaatcatatgcagaatattcagtttgcc |
30885762 |
T |
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| Q |
421 |
atttatcttcacactatcaaattggattaaactacaagaacccccgtcacatattctgaaacatagttcaatta |
494 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
30885761 |
atttatcttcacactatcaaattggattaaactacaagaacccccgtcacatattctcatacatagttcaatta |
30885688 |
T |
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