View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11080_low_8 (Length: 385)
Name: NF11080_low_8
Description: NF11080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11080_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 33220847 - 33220480
Alignment:
| Q |
1 |
agacacatatgattagattcgatcaatagctgcaaacaccttaggccttatcatattagtttgattttccaaatatgatgcatttattacaatagcaaat |
100 |
Q |
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| T |
33220847 |
agacacatgtgattagattcgatcaatagctgcaaacaccttaggccttatcatattagtttgattttccaaatatgatgcatttattacaatagcaaat |
33220748 |
T |
|
| Q |
101 |
atatccaaattatatttatttcactgccagctatatcttaccaatgcaagcctaatcttttctttttcatttgtttcaggataatcatcactgaccaatt |
200 |
Q |
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| T |
33220747 |
atatccaaattatatttatttcactgccagctatatcttaccaatgcaagcctaatcttttctttttcatttgtttcaggataatcatcactgaccaatt |
33220648 |
T |
|
| Q |
201 |
tcatgtttttattatggtaaaacaatttcaagggtataatggtaaagtgagaaattaccaactttagtttcctttctagagacaaaactaagaaatggat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33220647 |
tcatgtttttattatggtaaaacaatttcaagggtataatggtaaagtgagaaattaccaactttagtttcctttctagagacaaaactaagaaatggat |
33220548 |
T |
|
| Q |
301 |
acactgaaggagtatttatcaagcaaagcagaaaaaatagctacatctctatacaactacacattaag |
368 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33220547 |
acactgaacgagtatttatcaagcaaagcagaaaaaatagctacatctctatacaactacacattaag |
33220480 |
T |
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