View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11080_low_9 (Length: 381)
Name: NF11080_low_9
Description: NF11080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11080_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 19 - 363
Target Start/End: Complemental strand, 33185900 - 33185556
Alignment:
| Q |
19 |
aagcttcacatgaaagagagagaatcgatcaattcttcaattttttccatcaacaacaacaacccaccatgtcattctccatcatcgacgcttcaaagaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33185900 |
aagcttcacatgaaagagagagaatcgatcaattcttcaattttttccatcaacaacaacaacccaccatgtcattctccatcatcgacgcttcaaagaa |
33185801 |
T |
|
| Q |
119 |
gcgaaaacgatggacgaagattttcccgctacaatcgttcgctgaccctggttgtccaatttcaccttcaggtccgttccgtgaaaacgttcgactcttt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33185800 |
gcgaaaacgatggacgaagattttcccgctacaatcgttcgctgaccctggttgtccaatttcaccttcaggtccgttccgtgaaaacgttcgactcttt |
33185701 |
T |
|
| Q |
219 |
cttcaagaagctggtgagcttgaagattatacggttatgggaaatcctctttggtgtacttttctgattcatgaaaagaagaatctaatggttcctttct |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33185700 |
cttcaagaagctggtgagcttgaagattatacggttatgggaaatcctctttggtgcacttttctgattcatgaaaagaagaatctaatggttcctttct |
33185601 |
T |
|
| Q |
319 |
atgctcttgaagaagaagtttataactcttctcatcctttctgtg |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33185600 |
atgctcttgaagaagaagtttataactcttctcatcctttctgtg |
33185556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University