View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11081_low_2 (Length: 402)
Name: NF11081_low_2
Description: NF11081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11081_low_2 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 9748049 - 9747648
Alignment:
| Q |
1 |
caatttcttatgagattattccacttcttcaaaaacagaatttccaataggctttgcatatgtgtcccctcttaacaaagacttattccaagagccaaag |
100 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9748049 |
caattttttatgagattcttccacttcttcaaaaacagaatttccaataggctttgcatatgtgtcccctcttaacaaagacttattccaagagccaaag |
9747950 |
T |
|
| Q |
101 |
tataaaccagaagcaacaagtaaatcttttatgtaagattctgctggatcatttagttgcaccaattcggactcggaaggtttctgttttatagtgaatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||| || ||||||| | |
|
|
| T |
9747949 |
tataaaccagaagcaacaagtaaatctcttatgtaagattctgctggatcatttatttgcaccaattcagactcggacggtttctggttcgtagtgaagt |
9747850 |
T |
|
| Q |
201 |
ctttaacttcaacagaatcaagttgattgagttgtctccttagctctgccaaatcaacaagcaaataaatctatcagaaagagtctgaaaagatattcac |
300 |
Q |
| |
|
| | || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9747849 |
cctcgacatcactagaatcaagttgattgagttgtctccttagctctgccaaatcaacaagcaaataaatctatcagaaagagtctgaaaagatattcac |
9747750 |
T |
|
| Q |
301 |
gttgaaaaaagattatttgtcgatataattgcacatgaagtaagaacataataaaacaacattaaccggcttttcttaaatcaaaactatggtatcattg |
400 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9747749 |
gttgaaaaaagattatttgtcgataaaattgcacatgaagtaagaacataataaaacaacattaaccggcttttcttaaatcaaaactatggtatcattg |
9747650 |
T |
|
| Q |
401 |
ct |
402 |
Q |
| |
|
|| |
|
|
| T |
9747649 |
ct |
9747648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 10297609 - 10298005
Alignment:
| Q |
1 |
caatttcttatgagattattccacttcttcaaaaacagaatttccaataggctttgcatatgtgtcccctcttaacaaagacttattccaagagccaaag |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| |
|
|
| T |
10297609 |
caatttcttatgagattcttccacttcttcaaaaacagaatttctaataggctttgcatatgtgtcccctctaaacaaagatttattccaagaaccaaag |
10297708 |
T |
|
| Q |
101 |
tataaaccagaagcaacaagtaaatcttttatgtaagattctgctggatcatttagttgcaccaattcggactcggaaggtttctgttttatagtgaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||| ||||| |||||||| ||||| |||||||||| |
|
|
| T |
10297709 |
aataaaccagaagcaacaagtaaatctcttatgtaagattctgctggatcatttcgttacaccaattcagactcagaaggtttttgtttcatagtgaatt |
10297808 |
T |
|
| Q |
201 |
ctttaacttcaacagaatcaagttgattgagttgtctccttagctctgccaaatcaacaagcaaataaatctatcagaaagagtctgaaaagatattca- |
299 |
Q |
| |
|
| | ||| | | |||||||||||||||||||||||||||||||| ||| |||||||||||||||| || | |||||||||| ||||| | |||| |
|
|
| T |
10297809 |
cctcaacataatcagaatcaagttgattgagttgtctccttagcactgtcaaatcaacaagcaaagtgattcaccagaaagagttcgaaaaaaagttcag |
10297908 |
T |
|
| Q |
300 |
cgttg-aaaaaagattatttgtcgatataattgcacatgaagtaagaacataataaaacaacattaaccggcttttcttaaatcaaaactatggtat |
395 |
Q |
| |
|
| ||| ||||||||||||| | |||||||||||| ||||||| | |||||||||||||||||||||| ||||| || |||||||||||||||| |
|
|
| T |
10297909 |
cattgaaaaaaagattattcaccaatataattgcacgggaagtaaaagcataataaaacaacattaaccgcctttttttgtatcaaaactatggtat |
10298005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 10289433 - 10289860
Alignment:
| Q |
1 |
caatttcttatgagattattccacttcttcaaaaacagaatttccaataggctttgcatatgtgtcccctcttaacaaagacttattccaagagccaaag |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||| || |||||| |
|
|
| T |
10289433 |
caatttcttatgagattcttccacttcttcaaaaacagaatttccaataggctttgcatatgtgt-ccctcttaacgaagatttattccaggaaccaaag |
10289531 |
T |
|
| Q |
101 |
tataaaccagaagcaacaagtaaatcttttatgtaagattctgctgga------------------tcatttagttgcaccaattcggactcggaaggtt |
182 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| | ||| |||||||||||||||||||| ||||||| |
|
|
| T |
10289532 |
tataaaccagaagcaacaagtaaatctcttatgtaagattctgctggatagtgaattccagcaggttgattgagttgcaccaattcggactcagaaggtt |
10289631 |
T |
|
| Q |
183 |
tctgttttatagtgaattctttaacttcaacagaatcaagttgattgagttgtctccttagctctgccaaatcaacaagcaa--ataaatctatcagaaa |
280 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | | ||||||||||| |
|
|
| T |
10289632 |
tctgttttatagtgaattcctcaacttcaacagaatcaagttgattgagttgtctccttagctctgtcaaatcaacaagcaatgagatctctatcagaaa |
10289731 |
T |
|
| Q |
281 |
gagtctgaaaagatattcacgttg------aaaaaagattatttgtcgatataattgcacatgaagtaagaacataataaaacaacattaaccggc-ttt |
373 |
Q |
| |
|
|||| ||||| |||||||| || |||||| |||||| |||||||||||||| |||||||| ||||||||||||||||||||||| | ||| |
|
|
| T |
10289732 |
gagttcgaaaaaatattcacactgcattgaaaaaaatattattggtcgatataattgcgtgtgaagtaaaaacataataaaacaacattaaccacctttt |
10289831 |
T |
|
| Q |
374 |
tcttaaatcaaaactatggtatcattgct |
402 |
Q |
| |
|
|||| |||||||||||||||||||||||| |
|
|
| T |
10289832 |
tcttgaatcaaaactatggtatcattgct |
10289860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 355 - 402
Target Start/End: Complemental strand, 37744208 - 37744161
Alignment:
| Q |
355 |
aacaacattaaccggcttttcttaaatcaaaactatggtatcattgct |
402 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
37744208 |
aacaacattaacaggcttttcttaaatcaaaactaaagtatcattgct |
37744161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University