View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11082_high_1 (Length: 449)
Name: NF11082_high_1
Description: NF11082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11082_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 18 - 439
Target Start/End: Original strand, 1153763 - 1154184
Alignment:
| Q |
18 |
atgagaatgtacatccatacaggaatactttgtttattacatgactaaaattgcaatagctttgcacaaaaatctactttcagaagggctatcatcagca |
117 |
Q |
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| T |
1153763 |
atgagaatgtacatccatacaggaatactttgtttattacatgactaaaattgcaatagctttgcacaaaaatctactttcagaagggctatcatcagca |
1153862 |
T |
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| Q |
118 |
cagtttattggcccccgagacaaaagagaaaacaaactaaggaatgaaagaacgccaacatatatctatctacattctacaccacaaattcagtttatta |
217 |
Q |
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| T |
1153863 |
cggtttattggcccccgagacaaaagagaaaacaaactaaggaatgaaagaacaccaacatatatctatctacattctacaccacaaattcagtttatta |
1153962 |
T |
|
| Q |
218 |
cacacagtactctacaagcagtagagtttcatcatctcctgtcagttccactactctgaggaagcatcggtactctggtcaccactcttagcctttccca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1153963 |
cacacagtactctacaagcagtagagtttcatcatctcctgtcagttccactactctgaggaagcatcagtactctggtcaccactcttagcctttccca |
1154062 |
T |
|
| Q |
318 |
gcacaataccaagctgcacaaaacagtaccaaataattaattacttgttactagcaaattgaacacaattaagtgataatccagaaatcaggaaaatgta |
417 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1154063 |
gcacaataccaagctgcacaaaacagtaccagataattaattacttgttactagcaaattgaacacaattaagtgataatccagaaatcaggaaaatgta |
1154162 |
T |
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| Q |
418 |
agaagaagaaccttagcctttg |
439 |
Q |
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|||||||||||||||||||||| |
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| T |
1154163 |
agaagaagaaccttagcctttg |
1154184 |
T |
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