View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11082_low_2 (Length: 391)
Name: NF11082_low_2
Description: NF11082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11082_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 33442001 - 33441626
Alignment:
| Q |
1 |
aaaatggacaaaagcttttcataactgtgcagccaaaacaagatggttggtctccagtaccttcaccttctccatcaccatcacttgacctggcgacacc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33442001 |
aaaatggacaaaagcttttcataactgtgcagccaaaacaagatggttggtctccagtaccttcaccttctccatcaccatcacttgacctggtgacacc |
33441902 |
T |
|
| Q |
101 |
tgaagcaccaccttcgagttcaccatggcctgctagtggtgtcccccgtcgatccctgctgccaaagaagttgttccaaatatttaacagagattgatag |
200 |
Q |
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||||||||| ||||||| | ||||||||||||||||| | || ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
33441901 |
tgaagcaccgccttcgaatgcaccatggcctgctagtagcgttccccgtcgatccctgctgccaaagaagcttttccaaatatttaacagagattgatag |
33441802 |
T |
|
| Q |
201 |
ctgtttaagattggatgttaatcgatcatgtgtgatgtttcaaggagaggctannnnnnnnnaccttctagttattactaataattagcccccttcatta |
300 |
Q |
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| T |
33441801 |
ctgtttaagattggatgttaaccgatcatgtgtgatgtttcaaggagaggct--gtttttttcccagttagttattactaataattagcccccttcatta |
33441704 |
T |
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| Q |
301 |
ttatttatttagtttgtttacattggtgaatgtaatatcattttgttatttatgattaataaaagccatgagaggcat |
378 |
Q |
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| T |
33441703 |
ttatttatttagtttgtttacattggtgaatgtaatatcattttgttatttatgattaataaaacccatgagaggcat |
33441626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 33452221 - 33451846
Alignment:
| Q |
1 |
aaaatggacaaaagcttttcataactgtgcagccaaaacaagatggttggtctccagtaccttcaccttctccatcaccatcacttgacctggcgacacc |
100 |
Q |
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| T |
33452221 |
aaaatggacaaaagcttttcataactgtgcagccaaaacaagatggttggtctccagtaccttcaccttctccatcaccatcacttgacctggtgacacc |
33452122 |
T |
|
| Q |
101 |
tgaagcaccaccttcgagttcaccatggcctgctagtggtgtcccccgtcgatccctgctgccaaagaagttgttccaaatatttaacagagattgatag |
200 |
Q |
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||||||||| ||||||| | ||||||||||||||||| | || ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
33452121 |
tgaagcaccgccttcgaatgcaccatggcctgctagtagcgttccccgtcgatccctgctgccaaagaagcttttccaaatatttaacagagattgatag |
33452022 |
T |
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| Q |
201 |
ctgtttaagattggatgttaatcgatcatgtgtgatgtttcaaggagaggctannnnnnnnnaccttctagttattactaataattagcccccttcatta |
300 |
Q |
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| T |
33452021 |
ctgtttaagattggatgttaaccgatcatgtgtgatgtttcaaggagaggct--gtttttttcccagttagttattactaataattagcccccttcatta |
33451924 |
T |
|
| Q |
301 |
ttatttatttagtttgtttacattggtgaatgtaatatcattttgttatttatgattaataaaagccatgagaggcat |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33451923 |
ttatttatttagtttgtttacattggtgaatgtaatatcattttgttatttatgattaataaaacccatgagaggcat |
33451846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 33399685 - 33399629
Alignment:
| Q |
1 |
aaaatggacaaaagcttttcataactgtgcagccaaaacaagatggttggtctccag |
57 |
Q |
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|||||||||||||||||||||||| ||| ||||||||||||||||||| ||||| |
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| T |
33399685 |
aaaatggacaaaagcttttcataaatgttttaccaaaacaagatggttggtatccag |
33399629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 33395790 - 33395729
Alignment:
| Q |
9 |
caaaagcttttcataactgtgcagccaaaacaagatggttggtctccagtaccttcaccttc |
70 |
Q |
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|||||||||||||||| ||||||||| ||| |||||||||||||||||| |||||||| |
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| T |
33395790 |
caaaagcttttcataaacgtgcagccaccacagtttggttggtctccagtaccctcaccttc |
33395729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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