View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11082_low_3 (Length: 275)
Name: NF11082_low_3
Description: NF11082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11082_low_3 |
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| [»] scaffold0083 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 10359697 - 10359974
Alignment:
| Q |
1 |
aattttggaggcattgtttacgacaaaggtaactatctcagaagacaagtttaggccttagcagtgaaacttaaaaagatgacatata------------ |
88 |
Q |
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| T |
10359697 |
aatttcggaggcattgtttacgacaaaggtaactatctcagaagacaagtttaggccttagcagtgaaacttaaaaagatgacttatacagcaaggaagt |
10359796 |
T |
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| Q |
89 |
-----agct---aaaggttttgtcaatgaagaggaatgcagatattcattcagatcattctttcagatcaaatatatatacactttcttgaagagaaatg |
180 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
10359797 |
tttttagcttgtaaaggttttgtcaatgaagaggaatgcagatattcattcagatcattctttcagatcaaatatatatacactttctcgaagagaaatg |
10359896 |
T |
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| Q |
181 |
aaacgaaaaatggatcttaaggtctcaatcaggatcaactatatgattttgaagaaacaaaattgttaattcaacaaat |
259 |
Q |
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| T |
10359897 |
aaacg-aaaatggatcttaaggtctcaaccaggatcaactatatgattttgaagaaacaaaattgttaattcaacaaat |
10359974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 97 - 259
Target Start/End: Complemental strand, 9981444 - 9981283
Alignment:
| Q |
97 |
gttttgtcaatgaagaggaatgcagatattcattcagatcattctttcagatcaaatatatatacactttcttgaagagaaatgaaacgaaaaatggatc |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
9981444 |
gttttgtcaatgaagaggaatgcagatattcattcagatcattctttcagatcaaatatatatacactttctcaaagagaaatgaaacg-aaaatggatc |
9981346 |
T |
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| Q |
197 |
ttaaggtctcaatcaggatcaactatatgattttgaagaaacaaaattgttaattcaacaaat |
259 |
Q |
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| T |
9981345 |
ttaaggtctcaaccaggatcaactatatgattttgaagaaacaaaattgttaattcaacaaat |
9981283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 9994845 - 9994758
Alignment:
| Q |
1 |
aattttggaggcattgtttacgacaaaggtaactatctcagaagacaagtttaggccttagcagtgaaacttaaaaagatgacatata |
88 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9994845 |
aattttggaggcattgtttacgacaaaggtaactatctcagaagacaagtttaggccttagcagtgaaacttaaaaagatgacttata |
9994758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 122 - 227
Target Start/End: Complemental strand, 10035804 - 10035698
Alignment:
| Q |
122 |
atattcattcagatcattctttcagatcaaatatatata--cactttcttgaagagaaatgaaacgaaaaatggatcttaaggtctcaatcaggatcaac |
219 |
Q |
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| T |
10035804 |
atattcattcagatcattctttcagatgaaatatatatatacactttctcgaagagaaatgaaacgaaaa-tggatcttaaggtctcaaccaggatcaac |
10035706 |
T |
|
| Q |
220 |
tatatgat |
227 |
Q |
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|||||||| |
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| T |
10035705 |
tatatgat |
10035698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 10035952 - 10035899
Alignment:
| Q |
35 |
atctcagaagacaagtttaggccttagcagtgaaacttaaaaagatgacatata |
88 |
Q |
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| T |
10035952 |
atctcagtagacaagttttggccttagcagtgaaacttaaaaagatgacttata |
10035899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 237
Target Start/End: Original strand, 11778244 - 11778327
Alignment:
| Q |
157 |
tatacactttcttgaagagaaatgaaacgaa---aaatggatcttaaggtctcaatcaggatcaactatatgattttgaagaaa |
237 |
Q |
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| T |
11778244 |
tatacactttcttgaagcgaaatgaaatgaattaaactggatcttaaggtcagagccaggttcaactatatgattttgaagaaa |
11778327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 97 - 259
Target Start/End: Original strand, 53693 - 53854
Alignment:
| Q |
97 |
gttttgtcaatgaagaggaatgcagatattcattcagatcattctttcagatcaaatatatatacactttcttgaagagaaatgaaacgaaaaatggatc |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
53693 |
gttttgtcaatgaagaggaatgcagatattcattcagatcattctttcagatcaaatatatatacactttctcaaagagaaatgaaacg-aaaatggatc |
53791 |
T |
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| Q |
197 |
ttaaggtctcaatcaggatcaactatatgattttgaagaaacaaaattgttaattcaacaaat |
259 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53792 |
ttaaggtctcaaccaggatcaactatatgattttgaagaaacaaaattgttaattcaacaaat |
53854 |
T |
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