View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11082_low_4 (Length: 255)
Name: NF11082_low_4
Description: NF11082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11082_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 28817610 - 28817841
Alignment:
| Q |
18 |
cacagctgatagaggatagtctccaccgatgccgaatcctagccagaatctgaagaaacaaagactagttaccacggttttcggcgtggaaccaaaggaa |
117 |
Q |
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| T |
28817610 |
cacagctgatagaggatagtctccaccaatgccgaatcctagccagaatctgaagaaacaaagactagttaccacggttttcggcgtggaaccaaaggaa |
28817709 |
T |
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| Q |
118 |
agacctgataataaagcaaaaccaaccatggtagtaagagttatgccataaacnnnnnnnctaccaagtttgtcaccaagccagccaaagaagagttgcc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
28817710 |
agacctgataataaagcaaaaccaaccatggtagtaagagttatgccataaactttttttctaccaagtttgtcaccaagccagccaaagaagagttgcc |
28817809 |
T |
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| Q |
218 |
ctgcaagggtgccacacaacgcaacacaggtt |
249 |
Q |
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||||||||||||||||||||||||||| |||| |
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| T |
28817810 |
ctgcaagggtgccacacaacgcaacaccggtt |
28817841 |
T |
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