View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11083_low_4 (Length: 206)
Name: NF11083_low_4
Description: NF11083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11083_low_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 183959 - 183770
Alignment:
| Q |
17 |
atacagctcctctgtcgaagacccctcaagctcagactaaacgggagtttcccatcccttccaaattccaatgacagtaaaaatgaagacctctccatca |
116 |
Q |
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| T |
183959 |
atacagctcctctgtcgaagacccctcaagctcagactaaacgggagtttcccatcccttccaaattccaatgacagtaaaaatgaagacttctccatca |
183860 |
T |
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| Q |
117 |
tagtaatatgaactatgatcaactatacttgttataattcggttccttcgtgttaagcataatgttaagaatctcacagtcatgtcctat |
206 |
Q |
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| T |
183859 |
tagtaatatgaactatgatcaactatacttgttataattcggttccttcgtgttaagcataatgttaagaatctcacagtcatgtcctat |
183770 |
T |
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Target: chr1 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 121 - 192
Target Start/End: Complemental strand, 44607073 - 44607003
Alignment:
| Q |
121 |
aatatgaactatgatcaactatacttgttataattcggttccttcgtgttaagcataatgttaagaatctca |
192 |
Q |
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| T |
44607073 |
aatatgaactatgaacaactatact-gctaaaacttggttccttcctgttaagcataatgttaagaatctca |
44607003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 44628539 - 44628487
Alignment:
| Q |
121 |
aatatgaactatgatcaactatacttgttataattcggttccttcgtgttaag |
173 |
Q |
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| T |
44628539 |
aatatgagctatgaacaactatacttgctataactcggttccttcatgttaag |
44628487 |
T |
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