View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11084_high_1 (Length: 644)
Name: NF11084_high_1
Description: NF11084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11084_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 618; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 16 - 637
Target Start/End: Complemental strand, 44995129 - 44994508
Alignment:
| Q |
16 |
tcatcaaacaactcgcgagctcgatcattatcaccaaattcataaaaccctgtaacaacagtacaataagcaacagcatttgaaaaacaacccagcaccg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44995129 |
tcatcaaacaactcgcgagctcgatcattatcaccaaattcataaaaccctgtaacaacagtacaataagcaacagcatttgaaaaacaacccagcaccg |
44995030 |
T |
|
| Q |
116 |
gcatattccgaagcagcctcaaagcagcataaggcctacccgttctacaaaaactcttaatccttatagtataagtatacacatctgattcaaccttttt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44995029 |
gcatattccgaagcagcctcaaagcagcataaggcctacccgttctacaaaaactcttaatccttatagtataagtatacacatctgattcaaccttttt |
44994930 |
T |
|
| Q |
216 |
atctttcatcctcatataaaccttatgagcttgattaaaataaccaaactcaacaagaatattcataatagcattataagaataaacagatgggtcacag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44994929 |
atctttcatcctcatataaaccttatgagcttgattaaaataaccaaactcaacaagaatattcataatagcattataagaataaacagatgggtcacag |
44994830 |
T |
|
| Q |
316 |
ttgaataaatccatgcgttcaaatgtatcaacagcttcttgaatttttccttttcttccgtagaatctcatggcttcaacgtaaactccttctaacaatg |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44994829 |
ttgaataaatccatgcgttcaaatgtatcaacagcttcttgaatttttccttttcttccgtagaatctcatggcttcaacgtaaactccttctaacaatg |
44994730 |
T |
|
| Q |
416 |
tgttatcgagatttgatctcatttcagagagaagattctccatctcgttgaatttaccatggaagccaagtttttgaagcatggatttgtaggtgaagag |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44994729 |
tgttatcgagatttgatctcatttcagagagaagattctccatctcgttgaatttaccatggaagccaagtttttgaagcatggatttgtaggtgaagag |
44994630 |
T |
|
| Q |
516 |
agtgtgtttgaatccttgttcgttttttgatgagttgaagatttctaatgcttttagtggatctttttgtactttcactacagctgcaacatgttttgga |
615 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44994629 |
agtgtgtttgaatccttgttcgttttttgatgagttgaagatttctaatgcttttagtggatcattttgtactttcactacagctgcaacatgttttgga |
44994530 |
T |
|
| Q |
616 |
agcaacgcacgattcattctaa |
637 |
Q |
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|||||||||||||||||||||| |
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| T |
44994529 |
agcaacgcacgattcattctaa |
44994508 |
T |
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