View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11084_high_3 (Length: 393)
Name: NF11084_high_3
Description: NF11084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11084_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 239 - 364
Target Start/End: Original strand, 55319 - 55444
Alignment:
| Q |
239 |
attggctaattgaagcatcctctacagtttttcaactgtctagcaaaaaccaatctagaattgggaacctaaaatacgtatggaagaaccttcaggtgga |
338 |
Q |
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| T |
55319 |
attggctaattgaagcatcctctacagtttttcaactgtctagcaaaaaccaatctagaattgggaacctaaaatacctatggaagaaccttcaggtgga |
55418 |
T |
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| Q |
339 |
catccttcaacttaagcattctttgt |
364 |
Q |
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| T |
55419 |
catccttcaacttaagcattctttgt |
55444 |
T |
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Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 55260 - 55322
Alignment:
| Q |
13 |
catcatcaattatatttaatagaaattgtggtagtagtaaacacaaatgttatagaactattg |
75 |
Q |
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| T |
55260 |
catcatcaattatatttaatagaaattgtggtagtagcaaacacaaatgttatagaactattg |
55322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 166 - 364
Target Start/End: Original strand, 33754949 - 33755139
Alignment:
| Q |
166 |
taatggatttgcagcttatgcgtcctaaaaaggttacattctacaaaatagtttttgtaagaaagttaaaatcattggctaattgaagcatcctctacag |
265 |
Q |
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| T |
33754949 |
taatgtatttgcagcttatgcgccctaaaaaggctacaacttaccgactagtttttgtaagaaagttaaaatctttggctaattgaagcatcctctacag |
33755048 |
T |
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| Q |
266 |
tttttcaactgtctagcaaaaaccaatctagaattgggaacctaaaatacgtatggaagaaccttcaggtggacatccttcaacttaagcattctttgt |
364 |
Q |
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| T |
33755049 |
tttttcaaatgagcgacaaaaactaatatag--------acccaaaataccgatggaacaaccttcaggtggacacccttcaacttaagtactctttgt |
33755139 |
T |
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