View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11085_high_1 (Length: 900)
Name: NF11085_high_1
Description: NF11085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11085_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 371 - 883
Target Start/End: Complemental strand, 4348837 - 4348326
Alignment:
| Q |
371 |
aaaaaagtatagaatattgaattttgttagttattcattagaatgagaagataggggcatgatggggtccctccaagctttattctcctccctttggatt |
470 |
Q |
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| T |
4348837 |
aaaaaagtatagaatattgaattttgttagttattccatagaatgagaagataggggcatgatggggtccctccaagctttattctcctccctttggatt |
4348738 |
T |
|
| Q |
471 |
ttaggaacttagttagtcactgttgaagcaagttgagataccatcacnnnnnnnnnnagatagcgtgtctttgaagcaccttttaatttgcattgatttc |
570 |
Q |
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| T |
4348737 |
ttaggaacttagttagtcactgttgaagcaagttgagataccatcacttttttttttagatagcgtgtctttgaagcaccttttaatttgcattgatttc |
4348638 |
T |
|
| Q |
571 |
taagtattgcaattttccaattcctttgacttgcatgaccatgtcaaattgcattattttgtttgcaataatgcattgcaaagcagccataaattgcatt |
670 |
Q |
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| T |
4348637 |
taagtattgcaattttccaattcctttgacttgcatgaccatgtcaaattgcattattttgtttgcaataatgcattgcaaagcagccataaattgcatt |
4348538 |
T |
|
| Q |
671 |
atctccaacatatgactgcatttgcagcccatttctaacnnnnnnnnnnnaatatttggaaattaaagtaagacagccttgataaataatttaagggaac |
770 |
Q |
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| T |
4348537 |
atctccaacatatgactgcatttgcagcccatttctaactttttttttttaatatttggaaattaaagtaagacagccttgataaat-atttaagggaac |
4348439 |
T |
|
| Q |
771 |
gctagttggtagaaatatgcaagttacattgttgatataactctaaggaaacaattatagatattggttgtaagagttgtgtgtttgggttgttcaagat |
870 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4348438 |
actagttgatagaaatatgcaagttacattgttgatataactctaaggaaacaattatagatattggttgtaagagttgtgtgtttgggttgttcgagat |
4348339 |
T |
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| Q |
871 |
tacaaaaataaga |
883 |
Q |
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| T |
4348338 |
tacaaaaataaga |
4348326 |
T |
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