View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11085_high_11 (Length: 348)
Name: NF11085_high_11
Description: NF11085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11085_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 344
Target Start/End: Complemental strand, 26914670 - 26914339
Alignment:
| Q |
19 |
aaagggcaatgagggaaggcttttagagttaattcaaaatcctgtgactcaacacttaccggtcaactcgcttaaaataggtgagtattataactaggca |
118 |
Q |
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| T |
26914670 |
aaagggcaatgagggaaggctttttgagttaattcaaaatcctgtgactcaacacttaccggtcaactcgcttaaaataggtgagtattataactaggca |
26914571 |
T |
|
| Q |
119 |
atggtagaatgtcaatgtcttctgtgaagcgttttcttatgacgtgacactcttatgctgttgtaggtctttcgtttaactcgccaaagacagttaaaat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26914570 |
atggtagaatgtcaatgtcttctgtgaagcgttttcttatgacgtgacactcttatgctgttgtaggtctttcgtttaactcgccaaaggcagttaaaat |
26914471 |
T |
|
| Q |
219 |
aagcgactttgttgctgctaactgtg------ataagagtcttgtatttgtggtaagcttttgcaagtctttatatacactttatagatgggattatttt |
312 |
Q |
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|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
26914470 |
aaacgactttgttgctgctaactgtgataatcataagagtcttgtatttgtggtaagcttttgcaagtctttatatacactttacagatgggatcatttt |
26914371 |
T |
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| Q |
313 |
tgttatttcttgatcgaccgttctctgcttct |
344 |
Q |
| |
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|||||||||||||||||| ||| ||||||||| |
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| T |
26914370 |
tgttatttcttgatcgactgttgtctgcttct |
26914339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 19 - 344
Target Start/End: Complemental strand, 51182415 - 51182100
Alignment:
| Q |
19 |
aaagggcaatgagggaaggcttttagagttaattcaaaatcctgtgactcaacacttaccggtcaactcgcttaaaataggtgagtattataactaggca |
118 |
Q |
| |
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||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||| |||| |
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| T |
51182415 |
aaaggacaatgagggaaagcttttaaagttaattcaaaatcctgtgactcaacacttacccgccaactcgcttaaaattggtgagta---------ggca |
51182325 |
T |
|
| Q |
119 |
atggtagaatgtcaatgtcttctgtgaagcgttttcttatgacgtgacactcttatgctgttgtaggtctttcgtttaactcgccaaagacagttaaaat |
218 |
Q |
| |
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|||||| ||||||||||||||| | || | ||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
51182324 |
atggtacaatgtcaatgtcttcattc-------ttatgatgacgtcaaactcttatgctgttgtaggtctttcatttaactcgccaaagacagttaaaat |
51182232 |
T |
|
| Q |
219 |
aagcgactttgttgctgctaactgtgataagagtcttgtatttgtggtaagcttttgcaagtctttata------tacactttatagatgggattatttt |
312 |
Q |
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||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||| |
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| T |
51182231 |
aagagacttcgttgctgctaactgtgataagaatcttgtatttgtggtaagcttttgcaagtctttatataatattacactttacagatgggatcatttt |
51182132 |
T |
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| Q |
313 |
tgttatttcttgatcgaccgttctctgcttct |
344 |
Q |
| |
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|||||||||||||| || ||| ||||||||| |
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| T |
51182131 |
tgttatttcttgattgaatgttgtctgcttct |
51182100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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