View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11085_high_12 (Length: 300)

Name: NF11085_high_12
Description: NF11085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11085_high_12
NF11085_high_12
[»] chr1 (3 HSPs)
chr1 (20-292)||(7555139-7555411)
chr1 (164-231)||(19467418-19467485)
chr1 (24-69)||(33161362-33161407)
[»] chr6 (12 HSPs)
chr6 (112-293)||(9412064-9412242)
chr6 (127-233)||(6417092-6417198)
chr6 (163-286)||(11936024-11936147)
chr6 (163-286)||(11948004-11948127)
chr6 (183-233)||(28935338-28935388)
chr6 (153-214)||(7132324-7132385)
chr6 (153-214)||(7135247-7135308)
chr6 (153-214)||(7138170-7138231)
chr6 (183-231)||(6423907-6423955)
chr6 (183-292)||(6596241-6596347)
chr6 (183-231)||(6395539-6395587)
chr6 (191-231)||(6427183-6427223)
[»] chr4 (15 HSPs)
chr4 (129-289)||(8186311-8186471)
chr4 (119-233)||(553759-553873)
chr4 (112-293)||(1755493-1755674)
chr4 (153-231)||(661860-661938)
chr4 (184-292)||(571271-571379)
chr4 (110-292)||(7225094-7225275)
chr4 (113-207)||(53760229-53760323)
chr4 (111-220)||(1495619-1495728)
chr4 (153-235)||(55907651-55907733)
chr4 (187-235)||(3437630-3437678)
chr4 (148-291)||(21833248-21833391)
chr4 (112-214)||(1545883-1545985)
chr4 (30-67)||(553925-553962)
chr4 (25-69)||(532903-532947)
chr4 (153-289)||(641951-642087)
[»] chr7 (4 HSPs)
chr7 (127-233)||(10615713-10615819)
chr7 (138-233)||(10169011-10169106)
chr7 (138-233)||(10176536-10176631)
chr7 (112-293)||(7977813-7977994)
[»] chr3 (5 HSPs)
chr3 (163-286)||(1657474-1657597)
chr3 (127-293)||(13469599-13469765)
chr3 (111-289)||(51113131-51113309)
chr3 (179-228)||(51120658-51120707)
chr3 (112-233)||(51763325-51763446)
[»] chr8 (10 HSPs)
chr8 (188-292)||(32151909-32152013)
chr8 (114-233)||(17642872-17642991)
chr8 (151-235)||(14004141-14004225)
chr8 (109-233)||(17635588-17635712)
chr8 (163-285)||(28246044-28246166)
chr8 (112-214)||(34935922-34936024)
chr8 (159-224)||(18314620-18314685)
chr8 (151-235)||(5766579-5766663)
chr8 (184-249)||(21236138-21236203)
chr8 (184-232)||(18318650-18318698)
[»] scaffold1155 (1 HSPs)
scaffold1155 (111-214)||(1820-1923)
[»] scaffold0345 (1 HSPs)
scaffold0345 (111-214)||(8293-8396)
[»] scaffold0105 (1 HSPs)
scaffold0105 (111-214)||(30583-30686)
[»] chr2 (1 HSPs)
chr2 (153-235)||(1036587-1036669)
[»] chr5 (3 HSPs)
chr5 (167-255)||(41900484-41900572)
chr5 (169-233)||(28532813-28532877)
chr5 (204-255)||(32268513-32268564)


Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 20 - 292
Target Start/End: Complemental strand, 7555411 - 7555139
Alignment:
Q  20 ctccttcctccctcgtcttttccataggttcaccaacctcacctcccttgtcttcgctcgcaactgccgtgatatcgacaagctacttagcgaaatctct 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7555411 ctccttcctccctcgtcttttccataggttcaccaacctcacctcccttgtcttcgctcgcaactgccttgatatcgacaagctacttagcgaaatctct 7555312  T
Q  120 tgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacct 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7555311 tgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacct 7555212  T
Q  220 cactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttccctttgct 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7555211 cactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttccctttgct 7555139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 231
Target Start/End: Original strand, 19467418 - 19467485
Alignment:
Q  164 caccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgtt 231  Q
    |||||| || |||| ||| ||||||| |||| | ||||||||||||||||| ||||| ||||||||||    
T  19467418 caccattcccgcaaatgggttgcgagttttcactcaaaatattacaactttgacctctctcacttgtt 19467485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 33161407 - 33161362
Alignment:
Q  24 ttcctccctcgtcttttccataggttcaccaacctcacctcccttg 69  Q
    |||||||||||||| ||  | |||||||||||||||||||||||||    
T  33161407 ttcctccctcgtctcttgaaaaggttcaccaacctcacctcccttg 33161362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 112 - 293
Target Start/End: Complemental strand, 9412242 - 9412064
Alignment:
Q  112 aaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaac 211  Q
    |||||||| |||| |||||||| ||  |||||||| || | |||||||| | |||||| || ||   ||| |||||||||||||||||||||||||||||    
T  9412242 aaatctctcgttttccattgaaactctcatcacttaatctctccaaccatcgcaccattcccgc---tgggttgcgagctttctcccaaaatattacaac 9412146  T
Q  212 tttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttccctttgctt 293  Q
    |||||||||| ||||||  || | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9412145 tttaacctcattcacttcctcaagaatgggttctatcaatagcaatgacttgttactcattgctgaatgtttccctttgctt 9412064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 233
Target Start/End: Complemental strand, 6417198 - 6417092
Alignment:
Q  127 cattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcac 226  Q
    |||||||| | ||||||||| |||| ||||||||||||||  | || | || ||| || ||||||||||||||||| | ||||||||| ||||| |||||    
T  6417198 cattgaacatcacatcacttaatatctccaaccaacccacttttcccgtaaatgggttacgagctttctcccaaaagaatacaactttgacctctctcac 6417099  T
Q  227 ttgttcc 233  Q
    |||||||    
T  6417098 ttgttcc 6417092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 286
Target Start/End: Original strand, 11936024 - 11936147
Alignment:
Q  163 ccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatgactt 262  Q
    ||||||||||  ||| ||| |||| ||||||||| ||||| |||| || ||||||||| ||||| ||||||   || || ||||||||| ||| |||| |    
T  11936024 ccaccatcccgacaaatgggttgcaagctttctctcaaaacattaaaaatttaacctctctcacgtgttccttcattgaatctatcaatcgcactgacct 11936123  T
Q  263 gttactcattgctgaatgtttccc 286  Q
    ||| ||||||||||| ||||||||    
T  11936124 gttcctcattgctgattgtttccc 11936147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 286
Target Start/End: Original strand, 11948004 - 11948127
Alignment:
Q  163 ccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatgactt 262  Q
    ||||||||||  ||| ||| |||| ||||||||| ||||| |||| || ||||||||| ||||| ||||||   || || ||||||||| ||| |||| |    
T  11948004 ccaccatcccgacaaatgggttgcaagctttctctcaaaacattaaaaatttaacctctctcacgtgttccttcattgaatctatcaatcgcactgacct 11948103  T
Q  263 gttactcattgctgaatgtttccc 286  Q
    ||| ||||||||||| ||||||||    
T  11948104 gttcctcattgctgattgtttccc 11948127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 233
Target Start/End: Complemental strand, 28935388 - 28935338
Alignment:
Q  183 ttgcgagctttctcccaaaatattacaactttaacctcactcacttgttcc 233  Q
    |||||||| ||||||||||| ||||||||||||||||||||||| ||||||    
T  28935388 ttgcgagccttctcccaaaacattacaactttaacctcactcacatgttcc 28935338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 7132385 - 7132324
Alignment:
Q  153 tccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaacttt 214  Q
    |||||||||| |||| | ||||||| ||| |||||||||||||||||||| |||||||||||    
T  7132385 tccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaacttt 7132324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 7135308 - 7135247
Alignment:
Q  153 tccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaacttt 214  Q
    |||||||||| |||| | ||||||| ||| |||||||||||||||||||| |||||||||||    
T  7135308 tccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaacttt 7135247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 7138231 - 7138170
Alignment:
Q  153 tccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaacttt 214  Q
    |||||||||| |||| | ||||||| ||| |||||||||||||||||||| |||||||||||    
T  7138231 tccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaacttt 7138170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 6423955 - 6423907
Alignment:
Q  183 ttgcgagctttctcccaaaatattacaactttaacctcactcacttgtt 231  Q
    |||||||||||||||||||| || |||||||| ||||| ||||||||||    
T  6423955 ttgcgagctttctcccaaaacataacaactttgacctctctcacttgtt 6423907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 292
Target Start/End: Original strand, 6596241 - 6596347
Alignment:
Q  183 ttgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtt 282  Q
    ||||||| |||||||||||| || |||||||| ||||| ||||||||||| | ||   | | | || | |  ||||||||||||||||||||||| ||||    
T  6596241 ttgcgagttttctcccaaaacataacaactttgacctctctcacttgttctataa---actttctctacaaaaatgacttgttactcattgctgattgtt 6596337  T
Q  283 tccctttgct 292  Q
    |||| |||||    
T  6596338 tcccattgct 6596347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 6395587 - 6395539
Alignment:
Q  183 ttgcgagctttctcccaaaatattacaactttaacctcactcacttgtt 231  Q
    |||| |||| |||||||||||||||||||||| ||||| |||| |||||    
T  6395587 ttgcaagctctctcccaaaatattacaactttgacctctctcagttgtt 6395539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 6427223 - 6427183
Alignment:
Q  191 tttctcccaaaatattacaactttaacctcactcacttgtt 231  Q
    |||||||||||||||||||||||| ||||  ||||||||||    
T  6427223 tttctcccaaaatattacaactttgacctttctcacttgtt 6427183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 129 - 289
Target Start/End: Original strand, 8186311 - 8186471
Alignment:
Q  129 ttgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcactt 228  Q
    |||||||| ||||||||  || | || ||| |||||||||| ||||||| ||||||||||| | |||||| ||||||||||||||| ||||||||||| |    
T  8186311 ttgaacctcacatcactcaatctctctaacaaacccaccattcctgcaaatggattgcgagttctctcccgaaatattacaactttgacctcactcacat 8186410  T
Q  229 gttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttcccttt 289  Q
    ||||||| || || ||||||||||||| |||| | || ||||| || || ||||| |||||    
T  8186411 gttccaacattgaatctatcaatagcactgacatcttcctcatcgccgattgttttccttt 8186471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 119 - 233
Target Start/End: Complemental strand, 553873 - 553759
Alignment:
Q  119 ttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacc 218  Q
    |||||| ||||||||||| |||||||| ||| | ||| |  |||||||||| || |||| ||| |||||||||||||||||||| ||||||||||| |||    
T  553873 ttgttttccattgaacctcacatcactcgatctctcccaaaaacccaccattcccgcaaatgggttgcgagctttctcccaaaacattacaactttgacc 553774  T
Q  219 tcactcacttgttcc 233  Q
    || ||||| ||||||    
T  553773 tctctcacctgttcc 553759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 112 - 293
Target Start/End: Complemental strand, 1755674 - 1755493
Alignment:
Q  112 aaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaac 211  Q
    |||||||| ||||||||||||| || |||||  || || | |||||||||| | |||| ||  | |  || |||| ||||||||| ||||| ||||||||    
T  1755674 aaatctctcgtttcccattgaaacttacatcgtttaatctctccaaccaacacgccattcccaccaaagggttgcaagctttctctcaaaagattacaac 1755575  T
Q  212 tttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttccctttgctt 293  Q
    ||| ||||| ||||| |||||||| || | |  | || ||| ||||||||| || ||||||||||| |||||||||||||||    
T  1755574 tttgacctctctcacatgttccaacatcgctcatctccataccaatgacttcttcctcattgctgactgtttccctttgctt 1755493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 661938 - 661860
Alignment:
Q  153 tccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgtt 231  Q
    ||||||||| ||||||| || || | ||| |||||||||||||||||| ||||||||||||||||||| |||| |||||    
T  661938 tccaaccaaaccaccattcccgctaatggtttgcgagctttctcccaatatattacaactttaacctctctcatttgtt 661860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 292
Target Start/End: Complemental strand, 571379 - 571271
Alignment:
Q  184 tgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgttt 283  Q
    ||||||| ||||||||||||||||||||||| || || |||| ||||||| | | ||||||||||| || ||  |||||||| |||||  | || |||||    
T  571379 tgcgagcattctcccaaaatattacaactttgacatctctcaattgttcctacaaggattctatcagtaccaccgacttgttgctcatctcggactgttt 571280  T
Q  284 ccctttgct 292  Q
    |||||||||    
T  571279 ccctttgct 571271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 292
Target Start/End: Original strand, 7225094 - 7225275
Alignment:
Q  110 cgaaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattaca 209  Q
    |||||||||| |||| |||||||| || ||||||||| |||| || ||  || ||| ||| || |||  ||| |||| |||| | || ||||||||||||    
T  7225094 cgaaatctctcgttttccattgaaactcacatcacttaatatctcgaataaatccatcattccagcacgtgggttgcaagctctttctcaaaatattaca 7225193  T
Q  210 actttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttccctttgct 292  Q
    ||||| ||||| ||||| |||||| | ||  ||||| ||| ||||| |||| |||| ||||| || || ||||||||||||||    
T  7225194 actttgacctctctcacatgttcc-acatttattctgtcactagcactgacatgttcctcatcgcggattgtttccctttgct 7225275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 207
Target Start/End: Original strand, 53760229 - 53760323
Alignment:
Q  113 aatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatatta 207  Q
    ||||||| ||||||||||||| || ||||||||  || | ||||||||| |||| |||| ||||| ||| ||||||||||||| |||||| ||||    
T  53760229 aatctctcgtttcccattgaaactcacatcactcaatctctccaaccaatccactatccatgcaaatgggttgcgagctttcttccaaaacatta 53760323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 220
Target Start/End: Original strand, 1495619 - 1495728
Alignment:
Q  111 gaaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaa 210  Q
    |||||||||  ||| ||||||||  | ||||| |||||| | ||  |||||||||| || ||||| || |||||||||  |||||||||||| |||||||    
T  1495619 gaaatctctctttttccattgaaaatcacatcccttgatttatctgaccaacccacgattcctgctataggattgcgatatttctcccaaaaaattacaa 1495718  T
Q  211 ctttaacctc 220  Q
    ||||||||||    
T  1495719 ctttaacctc 1495728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 235
Target Start/End: Original strand, 55907651 - 55907733
Alignment:
Q  153 tccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaa 235  Q
    ||||||||||| | |||||| || | ||| || ||||||||||||||||||||||||||||| |  || |||| |||||||||    
T  55907651 tccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgaattctctcatttgttccaa 55907733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 3437630 - 3437678
Alignment:
Q  187 gagctttctcccaaaatattacaactttaacctcactcacttgttccaa 235  Q
    |||||||||||||||| ||||||||||| ||||| |||| |||||||||    
T  3437630 gagctttctcccaaaagattacaactttgacctctctcagttgttccaa 3437678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 291
Target Start/End: Original strand, 21833248 - 21833391
Alignment:
Q  148 atatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctat 247  Q
    |||| |||||| |||||||||| || |||  ||| ||||||| |||  | ||||| ||||| ||||| ||||| ||||||||||||||||| | |  | |    
T  21833248 atatctccaacaaacccaccattcccgcagatgggttgcgagtttttgcacaaaacattactactttgacctctctcacttgttccaaaattgctaattt 21833347  T
Q  248 caatagcaatgacttgttactcattgctgaatgtttccctttgc 291  Q
    ||||| || |||| |||| ||||| |  ||||||||||| ||||    
T  21833348 caataccactgacctgttcctcatcgtcgaatgtttccccttgc 21833391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 214
Target Start/End: Complemental strand, 1545985 - 1545883
Alignment:
Q  112 aaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaac 211  Q
    ||||||||  ||| |||||||| || ||| |||||| | ||||   |||| |||| |||||||| | ||| |||||| ||||||| ||||||||||||||    
T  1545985 aaatctctacttttccattgaaactcacaacacttgttctttctgtccaagccactatccctgccaatgggttgcgatctttctctcaaaatattacaac 1545886  T
Q  212 ttt 214  Q
    |||    
T  1545885 ttt 1545883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 553962 - 553925
Alignment:
Q  30 cctcgtcttttccataggttcaccaacctcacctccct 67  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  553962 cctcgccttttccaaaggttcaccaacctcacctccct 553925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 532947 - 532903
Alignment:
Q  25 tcctccctcgtcttttccataggttcaccaacctcacctcccttg 69  Q
    |||||||||| || |||| ||| ||||||||||||||||||||||    
T  532947 tcctccctcgcctcttccgtagattcaccaacctcacctcccttg 532903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 289
Target Start/End: Complemental strand, 642087 - 641951
Alignment:
Q  153 tccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaata 252  Q
    ||||||| | ||||||| ||||| | ||| |||| | |||||||||| || ||| |||||||||| || ||||  |||||||||||| |||| || || |    
T  642087 tccaaccgatccaccattcctgctaatgggttgcaatctttctcccagaagatttcaactttaacttctctcaaatgttccaaaatgaattccataaaaa 641988  T
Q  253 gcaatgacttgttactcattgctgaatgtttcccttt 289  Q
     ||  |||||||| || |||||  | |||||||||||    
T  641987 acaccgacttgttccttattgccaattgtttcccttt 641951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 127 - 233
Target Start/End: Complemental strand, 10615819 - 10615713
Alignment:
Q  127 cattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcac 226  Q
    |||||||| | ||||||||| |||||||||||||||||||  | || |||| ||| || ||||||||||||||||| ||||||||||| ||||| |||||    
T  10615819 cattgaacatcacatcacttaatatttccaaccaacccacagttcccgcaaatgggttacgagctttctcccaaaagattacaactttgacctctctcac 10615720  T
Q  227 ttgttcc 233  Q
    |||||||    
T  10615719 ttgttcc 10615713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 138 - 233
Target Start/End: Original strand, 10169011 - 10169106
Alignment:
Q  138 acatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttcc 233  Q
    |||||||| ||||||||| |||||  |||||| || |||| ||| ||||||| |||||| |||||||||| |||||| ||||| ||||||||||||    
T  10169011 acatcactcgatatttcctaccaatgcaccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgttcc 10169106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 138 - 233
Target Start/End: Original strand, 10176536 - 10176631
Alignment:
Q  138 acatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttcc 233  Q
    |||||||| ||||||||| |||||  |||||| || |||| ||| ||||||| |||||| |||||||||| |||||| ||||| ||||||||||||    
T  10176536 acatcactcgatatttcctaccaatgcaccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgttcc 10176631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 293
Target Start/End: Complemental strand, 7977994 - 7977813
Alignment:
Q  112 aaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaac 211  Q
    |||| |||||||||||||||||  | || |||||  || | |||||||| || ||||| || ||   ||| |||| || |||||||||||||||| ||||    
T  7977994 aaatttcttgtttcccattgaaaatcacgtcactcaatctctccaaccaccctaccattccggcttatgggttgccagttttctcccaaaatattgcaac 7977895  T
Q  212 tttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttccctttgctt 293  Q
    ||| ||||||||||  ||||| || || || ||||| |||| |||  || |||| ||||| || || |||||||||||||||    
T  7977894 tttgacctcactcaaatgttctaacattgaatctattaatatcaaccacatgtttctcatagcagattgtttccctttgctt 7977813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 163 - 286
Target Start/End: Complemental strand, 1657597 - 1657474
Alignment:
Q  163 ccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatgactt 262  Q
    ||||||||||  ||| ||| |||| ||||||||| ||||| |||| |||||||||||| ||||| ||||||   || || ||||||||| ||| |||| |    
T  1657597 ccaccatcccgacaaatgggttgcaagctttctctcaaaacattaaaactttaacctctctcacgtgttccttcattgaatctatcaatcgcactgacct 1657498  T
Q  263 gttactcattgctgaatgtttccc 286  Q
    ||| ||||||||||| ||||||||    
T  1657497 gttcctcattgctgattgtttccc 1657474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 293
Target Start/End: Original strand, 13469599 - 13469765
Alignment:
Q  127 cattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcac 226  Q
    |||||||| | ||||||||| || | ||||||||||||||  | ||||||| ||| || ||||||||||||||||| | ||||||  | ||||| |||||    
T  13469599 cattgaacatcacatcacttaatctctccaaccaacccactgttcctgcaaatgggttacgagctttctcccaaaagaatacaacgctgacctctctcac 13469698  T
Q  227 ttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttccctttgctt 293  Q
    ||||||| | || | |  | ||||||||| |||| |||| || ||||| |||||||| || ||||||    
T  13469699 ttgttcccacattgctaatttcaatagcagtgacctgttccttattgcagaatgttttccgttgctt 13469765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 289
Target Start/End: Original strand, 51113131 - 51113309
Alignment:
Q  111 gaaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaa 210  Q
    ||||||||| ||||||||||||| || || |||||  |||| |||||| ||  ||  || ||  ||| ||||||||||||||||||  ||||||||||||    
T  51113131 gaaatctctcgtttcccattgaaacttacttcactcaatatctccaacaaaagcattattcccacaaatggattgcgagctttctcggaaaatattacaa 51113230  T
Q  211 ctttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttcccttt 289  Q
    || | ||||| |||||||||||  | ||   || |||||| ||||  ||||||||  |||| |||||||| ||||||||    
T  51113231 ctctgacctctctcacttgttcgcacataagttgtatcaacagcaccgacttgttggtcatcgctgaatgcttcccttt 51113309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 51120658 - 51120707
Alignment:
Q  179 tggattgcgagctttctcccaaaatattacaactttaacctcactcactt 228  Q
    |||||||||||||||||| |||||| |||||||||| || ||||||||||    
T  51120658 tggattgcgagctttctctcaaaatgttacaactttgacttcactcactt 51120707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 233
Target Start/End: Original strand, 51763325 - 51763446
Alignment:
Q  112 aaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaac 211  Q
    |||||||| ||||||||||||| || ||||||||| || | ||||| || |  ||| | ||| ||| ||| ||||||| ||| || ||||| ||||||||    
T  51763325 aaatctctcgtttcccattgaaactcacatcacttaatctctccaaacagcttacctttcctacaaatgggttgcgagttttttcacaaaagattacaac 51763424  T
Q  212 tttaacctcactcacttgttcc 233  Q
    ||| || || ||||||||||||    
T  51763425 tttgacatctctcacttgttcc 51763446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 292
Target Start/End: Complemental strand, 32152013 - 32151909
Alignment:
Q  188 agctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttccct 287  Q
    ||||||||||||||| ||||||||||| ||||| |||||||||||    ||  ||||| ||||| |||  |||||||| |||||||| || |||||||||    
T  32152013 agctttctcccaaaacattacaactttgacctctctcacttgttctcgtatttattctttcaatggcaccgacttgttcctcattgccgattgtttccct 32151914  T
Q  288 ttgct 292  Q
    |||||    
T  32151913 ttgct 32151909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 233
Target Start/End: Original strand, 17642872 - 17642991
Alignment:
Q  114 atctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactt 213  Q
    ||||||||||| |||||||| || ||||||||  || | |||||||| | |||||| ||  | | ||| || | |||||||||||| |||||||||||||    
T  17642872 atctcttgttttccattgaaactcacatcactcaatctctccaaccatctcaccattcccaccaatgggttacaagctttctcccagaatattacaactt 17642971  T
Q  214 taacctcactcacttgttcc 233  Q
    | ||||| ||||||||||||    
T  17642972 tgacctctctcacttgttcc 17642991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 151 - 235
Target Start/End: Complemental strand, 14004225 - 14004141
Alignment:
Q  151 tttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaa 235  Q
    ||||||||||||||| | | ||||| | ||| |||||||||||||| || || ||||||||||| |||||||| | |||||||||    
T  14004225 tttccaaccaacccatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctcacttatttgttccaa 14004141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 109 - 233
Target Start/End: Original strand, 17635588 - 17635712
Alignment:
Q  109 gcgaaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattac 208  Q
    |||||||||||  ||| |||||||| || | ||||||  || | |||||||||| |||||| ||  | | ||| || |||||||||||||  ||||||||    
T  17635588 gcgaaatctctccttttccattgaaactcatatcactcaatctgtccaaccaactcaccattccaactaatgggttacgagctttctcccggaatattac 17635687  T
Q  209 aactttaacctcactcacttgttcc 233  Q
    |||||| ||||| ||||||||||||    
T  17635688 aactttgacctctctcacttgttcc 17635712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 285
Target Start/End: Original strand, 28246044 - 28246166
Alignment:
Q  163 ccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatgactt 262  Q
    ||||||||||  ||| ||| |||| ||||||||| ||||| |||| |||||||||||| |||||  |||||   || || ||||||||| ||| |||| |    
T  28246044 ccaccatcccgacaaatgggttgcaagctttctctcaaaacattaaaactttaacctctctcacgcgttccttcattgaatctatcaatcgcactgacct 28246143  T
Q  263 gttactcattgctgaatgtttcc 285  Q
    ||| ||||||| ||| |||||||    
T  28246144 gttcctcattgttgattgtttcc 28246166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 214
Target Start/End: Original strand, 34935922 - 34936024
Alignment:
Q  112 aaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaac 211  Q
    |||| ||| |||||||||||||||| ||||||||  || | |||||||| |||| ||| ||   || ||| ||||||| |||||| ||||||||||||||    
T  34935922 aaatttctagtttcccattgaaccttacatcactcaatctctccaaccatcccatcattccacaaaatggtttgcgagttttctcacaaaatattacaac 34936021  T
Q  212 ttt 214  Q
    |||    
T  34936022 ttt 34936024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 18314620 - 18314685
Alignment:
Q  159 caacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactc 224  Q
    ||||||||||| || |||| ||| || |||| |||||| ||||||||||||||||| |||||||||    
T  18314620 caacccaccattcccgcaaatggcttacgagttttctctcaaaatattacaactttgacctcactc 18314685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 235
Target Start/End: Original strand, 5766579 - 5766663
Alignment:
Q  151 tttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaa 235  Q
    |||||||||||| || | | ||||| | ||| |||||||||||||| || || ||||||||||| |||||||| | |||||||||    
T  5766579 tttccaaccaactcatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctcacttatttgttccaa 5766663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 249
Target Start/End: Complemental strand, 21236203 - 21236138
Alignment:
Q  184 tgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatca 249  Q
    ||||||| ||||||||||||| ||||||||| || || |||| ||||||| | | |||||||||||    
T  21236203 tgcgagcattctcccaaaatactacaactttgacatctctcaattgttcctacaaggattctatca 21236138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 18318650 - 18318698
Alignment:
Q  184 tgcgagctttctcccaaaatattacaactttaacctcactcacttgttc 232  Q
    |||||| ||||| | |||||||||||||||| ||||||||||| |||||    
T  18318650 tgcgagttttctgcaaaaatattacaactttgacctcactcacatgttc 18318698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 214
Target Start/End: Original strand, 1820 - 1923
Alignment:
Q  111 gaaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaa 210  Q
    ||||||||| |||||||||||||||| ||||||||  || | ||| |||||||||  || || |||  ||| ||||||| ||| ||||||||||||||||    
T  1820 gaaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaa 1919  T
Q  211 cttt 214  Q
    ||||    
T  1920 cttt 1923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 214
Target Start/End: Complemental strand, 8396 - 8293
Alignment:
Q  111 gaaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaa 210  Q
    ||||||||| |||||||||||||||| ||||||||  || | ||| |||||||||  || || |||  ||| ||||||| ||| ||||||||||||||||    
T  8396 gaaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaa 8297  T
Q  211 cttt 214  Q
    ||||    
T  8296 cttt 8293  T

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Target: scaffold0105 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 214
Target Start/End: Original strand, 30583 - 30686
Alignment:
Q  111 gaaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaa 210  Q
    ||||||||| |||||||||||||||| ||||||||  || | ||| |||||||||  || || |||  ||| ||||||| ||| ||||||||||||||||    
T  30583 gaaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaa 30682  T
Q  211 cttt 214  Q
    ||||    
T  30683 cttt 30686  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 235
Target Start/End: Original strand, 1036587 - 1036669
Alignment:
Q  153 tccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaa 235  Q
    ||||||||||| | |||||| || | ||| || ||||||||||||||||||||||||||||| || || |||| |||||||||    
T  1036587 tccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgacttctctcatttgttccaa 1036669  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 255
Target Start/End: Original strand, 41900484 - 41900572
Alignment:
Q  167 catccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagca 255  Q
    |||||| ||| |||| || |||||||| ||| |||| ||||||||||| ||||| |||||||||| | ||||| ||| |||||||||||    
T  41900484 catccccgcatttgggtttcgagctttttccaaaaagattacaactttgacctctctcacttgttacgaaatgcattatatcaatagca 41900572  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 28532877 - 28532813
Alignment:
Q  169 tccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttcc 233  Q
    |||| |||| ||||||||||||||| || ||||| ||||||||||| |||||  |||||||||||    
T  28532877 tcccagcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttcc 28532813  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 32268564 - 32268513
Alignment:
Q  204 attacaactttaacctcactcacttgttccaaaatggattctatcaatagca 255  Q
    ||||||||||| ||||| |||||||||||||||||| | | |||||||||||    
T  32268564 attacaactttgacctctctcacttgttccaaaatgcaatatatcaatagca 32268513  T

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