View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11085_high_19 (Length: 251)
Name: NF11085_high_19
Description: NF11085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11085_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 56 - 238
Target Start/End: Original strand, 33186589 - 33186771
Alignment:
| Q |
56 |
ttcaattttgagatataaatgtatgagaatgatagtgacacatatagcatacactattggtttgtgaaaatgtaatttgttttttagtgttatcaatacc |
155 |
Q |
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| T |
33186589 |
ttcaattttgagatataaatgtatgagaatgatagtgacacatatagcatacactattggtttgtgaaaatgtaatttgttttttagtgttatcaatacc |
33186688 |
T |
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| Q |
156 |
atattatatatatgtggtcaaataaaggtttatttatgaagatcactaaccatatggaaagccaagtatgtagctcgccatct |
238 |
Q |
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| T |
33186689 |
atattatatatatgtggtcaaataaaggtttatttatgaagatcactaaccatatggaaagccaagtatgtagctcgccatct |
33186771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 33186530 - 33186560
Alignment:
| Q |
1 |
cataaaatgaagttaattcattatttcaaac |
31 |
Q |
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| T |
33186530 |
cataaaatgaagttaattcattatttcaaac |
33186560 |
T |
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