View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11085_high_26 (Length: 239)
Name: NF11085_high_26
Description: NF11085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11085_high_26 |
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Alignment Details
Target: chr2 (Bit Score: 129; Significance: 7e-67; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 78 - 223
Target Start/End: Original strand, 2323138 - 2323285
Alignment:
| Q |
78 |
tttaaacactactagtgtgtgttatctcctatgtgggacattttttcaattcacac--cacttgttctatccaatgggagtttgtgtttattctttcaac |
175 |
Q |
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| T |
2323138 |
tttaaacactattagtgtgtgttatctcctatgtaggacattttttcaattcacacaacacttgttctatccaatgggagtttgtgtttattctttcaac |
2323237 |
T |
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| Q |
176 |
ttccattcatttaactagtgttccaacatctagcaatggtgttaatgg |
223 |
Q |
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| T |
2323238 |
ttccattcatttaactagtgttccaacatctagcaatggtgttaatgg |
2323285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 2296376 - 2296460
Alignment:
| Q |
1 |
taaatgaaatgtattgttacgtgtgcgtgactacata-tttttattt-ggcatgtgatcatagaaatgtttctcacaattttaaa |
83 |
Q |
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| T |
2296376 |
taaataaaatgtattgttatgtgtgtgtggccacataatttttattttggcatgtgatcatagaaatatttctcacaattttaaa |
2296460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 2312190 - 2312274
Alignment:
| Q |
1 |
taaatgaaatgtattgttacgtgtgcgtgactacata-tttttattt-ggcatgtgatcatagaaatgtttctcacaattttaaa |
83 |
Q |
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| T |
2312190 |
taaataaaatgtattgttatgtgtgtgtggccacataatttttattttggcatgtgatcatagaaatatttctcacaattttaaa |
2312274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 221
Target Start/End: Original strand, 2313430 - 2313550
Alignment:
| Q |
102 |
tctcctatgtgggacattttttcaattc--acaccacttgttctatccaatgggagtttgtgtttattctttcaacttccattcatttaactagtgttcc |
199 |
Q |
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| T |
2313430 |
tctcctatgtgaaacattctttcaattcctacaacactagttctatccaatgagactttgtgtt-actcttccatcttgcactcattaatctggtgttca |
2313528 |
T |
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| Q |
200 |
aacatctagcaatggtgttaat |
221 |
Q |
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|||| ||||||||||||||||| |
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| T |
2313529 |
aacaactagcaatggtgttaat |
2313550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 199
Target Start/End: Complemental strand, 42157328 - 42157205
Alignment:
| Q |
80 |
taaacactactagtgtgtgttatctcctatgtgggacattttttcaattcac--accacttgttctatccaatgggagtttgtgtttattctttcaactt |
177 |
Q |
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| T |
42157328 |
taaacactactagtgtatgtcctctcctatgtgggacattttttcaattcacataactctagttctatctaatgggactttgtgtttacttttctaattt |
42157229 |
T |
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| Q |
178 |
ccattca--tttaactagtgttcc |
199 |
Q |
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||| ||| ||||||||||||||| |
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| T |
42157228 |
ccactcagttttaactagtgttcc |
42157205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 9996136 - 9996075
Alignment:
| Q |
143 |
tatccaatgggagtttgtgtttattctttcaacttccattcatttaactagtgttccaacat |
204 |
Q |
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| T |
9996136 |
tatccaatgaaattttgtgtttattcttccaactttcactcatttaaccggtgttccaacat |
9996075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 198
Target Start/End: Original strand, 29086055 - 29086179
Alignment:
| Q |
80 |
taaacactactagtg--tgtgttatctcctatgtgggacattttttcaattcacac---cacttgttctatccaatgggagtttgtgtttattctttcaa |
174 |
Q |
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| T |
29086055 |
taaacactactagtgagtgtgtcctctcctatgtggggcattttttcaattcacaccaacactagttctatccattggga-cttgtgtttactcttccaa |
29086153 |
T |
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| Q |
175 |
cttccattc--atttaactagtgttc |
198 |
Q |
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|||||| || ||| ||||||||||| |
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| T |
29086154 |
cttccactcaaattcaactagtgttc |
29086179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 180
Target Start/End: Complemental strand, 17682321 - 17682243
Alignment:
| Q |
104 |
tcctatgtgggacattttttcaattcacac---cacttgttctatccaatgggagtttgtgtttattctttcaacttcca |
180 |
Q |
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| T |
17682321 |
tcctatgtgggatatttttttaattcacaccaacactagttctatccaatagga-cttgtgtttactcttccaacttcca |
17682243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 203
Target Start/End: Complemental strand, 27800723 - 27800655
Alignment:
| Q |
135 |
acttgttctatccaatgggagtttgtgtttattctttcaacttccattcatttaactagtgttccaaca |
203 |
Q |
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| T |
27800723 |
acttgttctatccaatgagactttgtgtttactcttccaacttccactcatttatctagtattccaaca |
27800655 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 154
Target Start/End: Complemental strand, 7806041 - 7805961
Alignment:
| Q |
80 |
taaacactactagtg--tgtgttatctcctatgtgggacattt-tttcaattcacac---cacttgttctatccaatggga |
154 |
Q |
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| T |
7806041 |
taaacactactagtggttgtgtcctctcctatgtgggacatttatttcaatacacaccaacactagttctatccaatggga |
7805961 |
T |
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