View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11085_high_29 (Length: 223)
Name: NF11085_high_29
Description: NF11085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11085_high_29 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 33186243 - 33186465
Alignment:
| Q |
1 |
ggcaagcataataaagaaaggaagacaatgtaaccgtgagacgaataatatatgcaatggagttcgagcaaacaagggaaatgatttgcttttttgttgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33186243 |
ggcaagcataataaagaaaggaagacaatgtaaccgtgagacgaataatatatgcaatggagttcgagcaaacaagggaaatgatttgcttttttgttgc |
33186342 |
T |
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| Q |
101 |
aagaaacattgtcgtaatgttttgagtgacaagaacaattgtaatgtttgtggcaacaaatgcaagcaaggagaaagatgttgcaatggagtttgtacca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33186343 |
aagaaacattgtcgtaatgttttgagtgacaagaacaattgtaatgtttgtggcaacaaatgcaagcaaggagaaagatgttgcaatggagtttgtacca |
33186442 |
T |
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| Q |
201 |
atgttttgtcaaatgttcgtcat |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
33186443 |
atgttttgtcaaatgttcgtcat |
33186465 |
T |
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