View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11085_high_3 (Length: 654)

Name: NF11085_high_3
Description: NF11085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11085_high_3
NF11085_high_3
[»] chr3 (10 HSPs)
chr3 (1-347)||(51815588-51815934)
chr3 (434-510)||(32594563-32594639)
chr3 (437-509)||(33439978-33440050)
chr3 (432-545)||(38745291-38745404)
chr3 (433-464)||(7950929-7950960)
chr3 (434-521)||(21892545-21892631)
chr3 (434-464)||(51816021-51816051)
chr3 (512-551)||(7430486-7430526)
chr3 (432-504)||(9737615-9737687)
chr3 (436-464)||(51829635-51829663)
[»] chr7 (9 HSPs)
chr7 (431-495)||(45664673-45664737)
chr7 (432-515)||(9667259-9667342)
chr7 (436-515)||(27227292-27227371)
chr7 (432-471)||(32958486-32958525)
chr7 (436-515)||(36877000-36877079)
chr7 (432-515)||(47684515-47684598)
chr7 (433-463)||(19554704-19554734)
chr7 (435-497)||(40097953-40098015)
chr7 (432-461)||(45967443-45967472)
[»] chr4 (12 HSPs)
chr4 (432-515)||(13538283-13538366)
chr4 (434-545)||(31351671-31351782)
chr4 (431-515)||(49479452-49479536)
chr4 (432-513)||(35130641-35130722)
chr4 (432-515)||(35010411-35010494)
chr4 (488-555)||(44294257-44294326)
chr4 (435-515)||(55967780-55967860)
chr4 (436-515)||(3746415-3746493)
chr4 (437-515)||(28091357-28091435)
chr4 (436-498)||(42657503-42657565)
chr4 (488-545)||(21120689-21120745)
chr4 (432-461)||(45872386-45872415)
[»] chr2 (4 HSPs)
chr2 (432-515)||(9198957-9199041)
chr2 (469-531)||(31905715-31905777)
chr2 (436-515)||(8915565-8915644)
chr2 (434-521)||(31068915-31069002)
[»] chr1 (3 HSPs)
chr1 (432-551)||(7550009-7550126)
chr1 (434-509)||(44729823-44729898)
chr1 (432-513)||(35996975-35997056)
[»] chr5 (4 HSPs)
chr5 (435-555)||(28580396-28580520)
chr5 (437-544)||(30327657-30327764)
chr5 (435-471)||(43406076-43406112)
chr5 (434-464)||(36730260-36730290)
[»] chr8 (4 HSPs)
chr8 (432-511)||(12959704-12959783)
chr8 (432-515)||(28300084-28300167)
chr8 (432-464)||(9209642-9209674)
chr8 (432-464)||(31441264-31441296)
[»] chr6 (2 HSPs)
chr6 (432-550)||(6922627-6922745)
chr6 (432-515)||(20599420-20599503)
[»] scaffold0040 (1 HSPs)
scaffold0040 (488-551)||(58637-58700)
[»] scaffold0035 (1 HSPs)
scaffold0035 (435-471)||(23705-23741)


Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 51815588 - 51815934
Alignment:
Q  1 tgctaatacaactagcctgagttagatatccacttttgaactactggcgtgagttaattcacgcataagtatatttaaaaaatcagttaagcgttagcgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||| | |||||||||||||||||||||||| ||||||    
T  51815588 tgctaatacaactagcctgagttagatatccacttttgaactggtggcgtgagctaattcacgcatgaatatatttaaaaaatcagttaagcgctagcgt 51815687  T
Q  101 tttgtgctggaggaagagcaagaattttaaaatcgaggcttacaaacagaaataggagcccagctacaacatttaaagggccaggttagtccaactagtt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  51815688 tttgtgctggaggaagagcaagaattttaaaatcgaggcttacaaacagaaataggagcccagctacaacatttgaagggccaggttagtccaactagtt 51815787  T
Q  201 tgcagctatatttccttagaactaatttctatctgcaccccgatattcagctaaaatacactaccggtaaaaagttgcattttagggggtggattggata 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51815788 tgcagctatatttccttagaactaatttctatctgcaccccgatattcagctaaaatacactaccggtaaaaagttgcattttagggggtggattggata 51815887  T
Q  301 tttcatttctttaatcacaggtcagtgttttgataattatactttcg 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  51815888 tttcatttctttaatcacaggtcagtgttttgataattatactttcg 51815934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 434 - 510
Target Start/End: Original strand, 32594563 - 32594639
Alignment:
Q  434 ccgtaagtgtagctcagttggtagctaccagaaataatggttgtaggggttggggttcgaaccccgaatttcccact 510  Q
    |||||||||||| ||||||||||| ||  || ||||||   ||||| ||| ||||||||||||||||||||||||||    
T  32594563 ccgtaagtgtagttcagttggtagttaataggaataatttgtgtagtggtcggggttcgaaccccgaatttcccact 32594639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 437 - 509
Target Start/End: Original strand, 33439978 - 33440050
Alignment:
Q  437 taagtgtagctcagttggtagctaccagaaataatggttgtaggggttggggttcgaaccccgaatttcccac 509  Q
    ||||||||||||| |||||||||| ||||||||||   ||||||||| |||||| |||  |||||||| ||||    
T  33439978 taagtgtagctcacttggtagctatcagaaataatttgtgtaggggtcggggtttgaattccgaattttccac 33440050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 432 - 545
Target Start/End: Complemental strand, 38745404 - 38745291
Alignment:
Q  432 tcccgtaagtgtagctcagttggtagctaccagaaataatggttgtaggggttggggttcgaaccccgaatttcccacttctccgcactttaaaatgtgt 531  Q
    |||||||| ||||||| ||||||| | ||||||  |||||   || |||||| ||| ||||||||||||||| ||||||||||| |||   |||||||||    
T  38745404 tcccgtaaatgtagcttagttggtggttaccagggataatttgtgcaggggtcgggattcgaaccccgaattccccacttctccacac---aaaatgtgt 38745308  T
Q  532 g---atctagccactag 545  Q
    |   |||||||||||||    
T  38745307 gtgaatctagccactag 38745291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 464
Target Start/End: Original strand, 7950929 - 7950960
Alignment:
Q  433 cccgtaagtgtagctcagttggtagctaccag 464  Q
    ||||||||||||||||||||||||||||||||    
T  7950929 cccgtaagtgtagctcagttggtagctaccag 7950960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 521
Target Start/End: Complemental strand, 21892631 - 21892545
Alignment:
Q  434 ccgtaagtgtagctcagttggtagctaccagaaataatggttgtaggggttggggttcgaaccccgaatttcccacttctccgcactt 521  Q
    |||||||||||||||||||| || |||||||| |||||   || |||| | |||||||||| ||| |||| ||||||||||| |||||    
T  21892631 ccgtaagtgtagctcagttgataactaccagagataatttatggagggatcggggttcgaa-cccaaattccccacttctccacactt 21892545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 434 - 464
Target Start/End: Original strand, 51816021 - 51816051
Alignment:
Q  434 ccgtaagtgtagctcagttggtagctaccag 464  Q
    |||||||||||||||||||||||||||||||    
T  51816021 ccgtaagtgtagctcagttggtagctaccag 51816051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 512 - 551
Target Start/End: Original strand, 7430486 - 7430526
Alignment:
Q  512 ctccgcactttaaaatgtgtg-atctagccactaggctatt 551  Q
    ||||||||||||||||||||| |||||||||| ||||||||    
T  7430486 ctccgcactttaaaatgtgtgcatctagccacaaggctatt 7430526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 432 - 504
Target Start/End: Complemental strand, 9737687 - 9737615
Alignment:
Q  432 tcccgtaagtgtagctcagttggtagctaccagaaataatggttgtaggggttggggttcgaaccccgaattt 504  Q
    |||||||  ||||||||||||||||||||||||| ||| |   || ||||||  ||||||||||| |||||||    
T  9737687 tcccgtagatgtagctcagttggtagctaccagagatattatgtgcaggggtcagggttcgaacctcgaattt 9737615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 436 - 464
Target Start/End: Complemental strand, 51829663 - 51829635
Alignment:
Q  436 gtaagtgtagctcagttggtagctaccag 464  Q
    |||||||||||||||||||||||||||||    
T  51829663 gtaagtgtagctcagttggtagctaccag 51829635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 431 - 495
Target Start/End: Original strand, 45664673 - 45664737
Alignment:
Q  431 atcccgtaagtgtagctcagttggtagctaccagaaataatggttgtaggggttggggttcgaac 495  Q
    ||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||    
T  45664673 atcccgtaagtgtagctcagttggtagctactagagataatgtttgtaggggttggggttcgaac 45664737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 432 - 515
Target Start/End: Complemental strand, 9667342 - 9667259
Alignment:
Q  432 tcccgtaagtgtagctcagttggtagctaccagaaataatggttgtaggggttggggttcgaaccccgaatttcccacttctcc 515  Q
    ||||||||||||||||||||||||||||| |||| |||||   |||||||| ||| ||||||||||| ||||||||||||||||    
T  9667342 tcccgtaagtgtagctcagttggtagctatcagagataatttgtgtaggggctggagttcgaaccccaaatttcccacttctcc 9667259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 515
Target Start/End: Complemental strand, 27227371 - 27227292
Alignment:
Q  436 gtaagtgtagctcagttggtagctaccagaaataatggttgtaggggttggggttcgaaccccgaatttcccacttctcc 515  Q
    ||||||||||||||||||||| |||||||| |||||   | ||||||||| | |||||| |||  ||| |||||||||||    
T  27227371 gtaagtgtagctcagttggtacctaccagagataatttgtataggggttgtgtttcgaatcccagattccccacttctcc 27227292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 471
Target Start/End: Original strand, 32958486 - 32958525
Alignment:
Q  432 tcccgtaagtgtagctcagttggtagctaccagaaataat 471  Q
    ||||||||||||||||| |||||||||||||| |||||||    
T  32958486 tcccgtaagtgtagctcggttggtagctaccaaaaataat 32958525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 515
Target Start/End: Complemental strand, 36877079 - 36877000
Alignment:
Q  436 gtaagtgtagctcagttggtagctaccagaaataatggttgtaggggttggggttcgaaccccgaatttcccacttctcc 515  Q
    |||||||  |||||||||||||||| ||   |||||   || |||||| ||||||||||||||| |||||||||||||||    
T  36877079 gtaagtgatgctcagttggtagctaacatggataatttgtgcaggggtcggggttcgaaccccggatttcccacttctcc 36877000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 515
Target Start/End: Complemental strand, 47684598 - 47684515
Alignment:
Q  432 tcccgtaagtgtagctcagttggtagctaccagaaataatggttgtaggggttggggttcgaaccccgaatttcccacttctcc 515  Q
    ||||||| |||||||||||||||  |||||||   |||||   || ||||||||||||| |||||||| |||||| ||||||||    
T  47684598 tcccgtaggtgtagctcagttgggggctaccaaggataatttgtgcaggggttggggtttgaaccccggatttcctacttctcc 47684515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 433 - 463
Target Start/End: Original strand, 19554704 - 19554734
Alignment:
Q  433 cccgtaagtgtagctcagttggtagctacca 463  Q
    |||||||||||||||||||||||||||||||    
T  19554704 cccgtaagtgtagctcagttggtagctacca 19554734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 497
Target Start/End: Complemental strand, 40098015 - 40097953
Alignment:
Q  435 cgtaagtgtagctcagttggtagctaccagaaataatggttgtaggggttggggttcgaaccc 497  Q
    |||| |||||||||||||||||||||| || ||||||  |||||||||| || ||| ||||||    
T  40098015 cgtacgtgtagctcagttggtagctactaggaataatttttgtaggggtcggagtttgaaccc 40097953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 461
Target Start/End: Complemental strand, 45967472 - 45967443
Alignment:
Q  432 tcccgtaagtgtagctcagttggtagctac 461  Q
    ||||||||||||||||||||||||||||||    
T  45967472 tcccgtaagtgtagctcagttggtagctac 45967443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 432 - 515
Target Start/End: Complemental strand, 13538366 - 13538283
Alignment:
Q  432 tcccgtaagtgtagctcagttggtagctaccagaaataatggttgtaggggttggggttcgaaccccgaatttcccacttctcc 515  Q
    ||||||||||||||||||||||||||||| |||| |||||   |||||||| ||| ||||||||||| ||||||||||||||||    
T  13538366 tcccgtaagtgtagctcagttggtagctatcagagataatttgtgtaggggctggagttcgaaccccaaatttcccacttctcc 13538283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 434 - 545
Target Start/End: Complemental strand, 31351782 - 31351671
Alignment:
Q  434 ccgtaagtgtagctcagttggtagctaccagaaataatggttgtaggggttggggttcgaaccccgaatttcccacttctccgcactttaaaatgtgtg- 532  Q
    |||||||||||||||||||||||||||||||| |||||   || |||||| ||||||||||| ||| |||||||| |||||| |||  ||| |||||||     
T  31351782 ccgtaagtgtagctcagttggtagctaccagagataatttgtgcaggggtcggggttcgaactccggatttcccatttctccacac-ataatatgtgtga 31351684  T
Q  533 atctagccactag 545  Q
    |||||||||||||    
T  31351683 atctagccactag 31351671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 431 - 515
Target Start/End: Original strand, 49479452 - 49479536
Alignment:
Q  431 atcccgtaagtgtagctcagttggtagctaccagaaataatggttgtaggggttggggttcgaaccccgaatttcccacttctcc 515  Q
    ||||| ||||||||| |||||||||||||| ||||||||||   ||||||||| |||||||||| ||||||||||| ||||||||    
T  49479452 atcccataagtgtagttcagttggtagctatcagaaataatttatgtaggggtaggggttcgaatcccgaatttccaacttctcc 49479536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 432 - 513
Target Start/End: Complemental strand, 35130722 - 35130641
Alignment:
Q  432 tcccgtaagtgtagctcagttggtagctaccagaaataatggttgtaggggttggggttcgaaccccgaatttcccacttct 513  Q
    |||||||||||||| ||||||||||||||||||| |||||   || |||||  ||||||||||||||| |||||||||||||    
T  35130722 tcccgtaagtgtagttcagttggtagctaccagagataatttgtgcaggggccggggttcgaaccccggatttcccacttct 35130641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 432 - 515
Target Start/End: Complemental strand, 35010494 - 35010411
Alignment:
Q  432 tcccgtaagtgtagctcagttggtagctaccagaaataatggttgtaggggttggggttcgaaccccgaatttcccacttctcc 515  Q
    |||||||||| |||||||||||||||||| |||| |||||   || ||| || ||||||||||| ||| |||||||||||||||    
T  35010494 tcccgtaagtttagctcagttggtagctatcagagataatttgtgcaggagtcggggttcgaactccggatttcccacttctcc 35010411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 488 - 555
Target Start/End: Complemental strand, 44294326 - 44294257
Alignment:
Q  488 gttcgaaccccgaatttcccacttctccgcactttaaaa--tgtgtgatctagccactaggctattgaac 555  Q
    |||||||||| | |||| |||||||||| ||| ||||||  |||||||||||||||||||||||||||||    
T  44294326 gttcgaaccctggattttccacttctccacaccttaaaaagtgtgtgatctagccactaggctattgaac 44294257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 435 - 515
Target Start/End: Original strand, 55967780 - 55967860
Alignment:
Q  435 cgtaagtgtagctcagttggtagctaccagaaataatggttgtaggggttggggttcgaaccccgaatttcccacttctcc 515  Q
    ||||||||||||||| |||||| ||||||   |||||   ||||||||  ||||||||||||||| ||| |||||||||||    
T  55967780 cgtaagtgtagctcaattggtaactaccaaggataatttgtgtaggggccggggttcgaaccccggattccccacttctcc 55967860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 515
Target Start/End: Complemental strand, 3746493 - 3746415
Alignment:
Q  436 gtaagtgtagctcagttggtagctaccagaaataatggttgtaggggttggggttcgaaccccgaatttcccacttctcc 515  Q
    |||||| |||||| |||||||||||||||| ||| |   |||||||| || ||||||||||||| |||||||| ||||||    
T  3746493 gtaagtttagctcggttggtagctaccagagatattatgtgtagggg-tgaggttcgaaccccggatttcccatttctcc 3746415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 437 - 515
Target Start/End: Complemental strand, 28091435 - 28091357
Alignment:
Q  437 taagtgtagctcagttggtagctaccagaaataatggttgtaggggttggggttcgaaccccgaatttcccacttctcc 515  Q
    |||||||||||||||||||||||| |||  |||||   || |||| ||| ||||||||| || |||| |||||||||||    
T  28091435 taagtgtagctcagttggtagctatcagtgataatttatgcagggattgaggttcgaactccaaattccccacttctcc 28091357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 436 - 498
Target Start/End: Original strand, 42657503 - 42657565
Alignment:
Q  436 gtaagtgtagctcagttggtagctaccagaaataatggttgtaggggttggggttcgaacccc 498  Q
    ||||||||||||||||||||||||| |||| |||||   | ||||||| || |||||||||||    
T  42657503 gtaagtgtagctcagttggtagctatcagagataatttatataggggtcggagttcgaacccc 42657565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 545
Target Start/End: Original strand, 21120689 - 21120745
Alignment:
Q  488 gttcgaaccccgaatttcccacttctccgcactttaaaatgtgtgatctagccactag 545  Q
    ||||||||||||||  ||||| |||||| || |||||||||||||| |||||||||||    
T  21120689 gttcgaaccccgaacgtcccagttctccaca-tttaaaatgtgtgagctagccactag 21120745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 461
Target Start/End: Original strand, 45872386 - 45872415
Alignment:
Q  432 tcccgtaagtgtagctcagttggtagctac 461  Q
    ||||||||||||||||||||||||||||||    
T  45872386 tcccgtaagtgtagctcagttggtagctac 45872415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 432 - 515
Target Start/End: Complemental strand, 9199041 - 9198957
Alignment:
Q  432 tcccgtaagtgtagctcagttggtagctaccagaaataatggttgtag-gggttggggttcgaaccccgaatttcccacttctcc 515  Q
    |||||||||||||||||||||||||||||||||| |||||   || || ||| ||||||||||||| ||||||||||||||||||    
T  9199041 tcccgtaagtgtagctcagttggtagctaccagagataatttgtgcagcgggctggggttcgaacctcgaatttcccacttctcc 9198957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 469 - 531
Target Start/End: Original strand, 31905715 - 31905777
Alignment:
Q  469 aatggttgtaggggttggggttcgaaccccgaatttcccacttctccgcactttaaaatgtgt 531  Q
    |||| ||| |||||||||||||||||| | ||||| |||||||||||||||||||||| ||||    
T  31905715 aatgtttgcaggggttggggttcgaacactgaattccccacttctccgcactttaaaaagtgt 31905777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 436 - 515
Target Start/End: Original strand, 8915565 - 8915644
Alignment:
Q  436 gtaagtgtagctcagttggtagctaccagaaataatggttgtaggggttggggttcgaaccccgaatttcccacttctcc 515  Q
    ||||||| || |||||||||||||| ||||||||||   || | ||||||||||||| |||||| ||| |||||||||||    
T  8915565 gtaagtgaagttcagttggtagctatcagaaataatttgtgaatgggttggggttcgtaccccggattccccacttctcc 8915644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 521
Target Start/End: Complemental strand, 31069002 - 31068915
Alignment:
Q  434 ccgtaagtgtagctcagttggtagctaccagaaataatggttgtaggggttggggttcgaaccccgaatttcccacttctccgcactt 521  Q
    ||||||||||||||||||||||||||| ||   |||||   ||||||||| || ||| |||| ||| ||| ||||||||||| |||||    
T  31069002 ccgtaagtgtagctcagttggtagctaacattgataatttgtgtaggggtcggagtttgaactccggattccccacttctccacactt 31068915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 432 - 551
Target Start/End: Original strand, 7550009 - 7550126
Alignment:
Q  432 tcccgtaagtgtagctcagttggtagctaccagaaataatggttgtaggggttggggttcgaaccccgaatttcccacttctccgcactttaaaatgtgt 531  Q
    |||||||||||||||||||||| ||||||||||| | | |  ||| |||||  ||||||||||||||| ||| ||||||||||| ||||||  | |||||    
T  7550009 tcccgtaagtgtagctcagttgatagctaccagagacattatttgcaggggccggggttcgaaccccggattccccacttctccacacttt--agtgtgt 7550106  T
Q  532 gatctagccactaggctatt 551  Q
    ||||||||| ||||| ||||    
T  7550107 gatctagcctctaggttatt 7550126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 434 - 509
Target Start/End: Original strand, 44729823 - 44729898
Alignment:
Q  434 ccgtaagtgtagctcagttggtagctaccagaaataatggttgtaggggttggggttcgaaccccgaatttcccac 509  Q
    |||||||||||| ||||||| ||||||||||| |||||| || || |||||||||||| || ||| |||| |||||    
T  44729823 ccgtaagtgtagttcagttgatagctaccagagataatgtttataagggttggggttcaaatcccaaattccccac 44729898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 513
Target Start/End: Original strand, 35996975 - 35997056
Alignment:
Q  432 tcccgtaagtgtagctcagttggtagctaccagaaataatggttgtaggggttggggttcgaaccccgaatttcccacttct 513  Q
    |||| |||||||||||||||||||||||| |||| |||||   || || ||||||||||| ||  |||||||  ||||||||    
T  35996975 tcccataagtgtagctcagttggtagctatcagagataatttgtgcagtggttggggttcaaattccgaattctccacttct 35997056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 435 - 555
Target Start/End: Complemental strand, 28580520 - 28580396
Alignment:
Q  435 cgtaagtgtagctcagttggtagctaccagaaataatggttgtaggggttggggttcgaaccccgaatttcccacttctccgcacttt----aaaatgtg 530  Q
    ||||||||||||||||||| ||||||||||| | |||| ||| ||| |   |||||||||||||  ||| ||||||||||| ||||||    ||| ||||    
T  28580520 cgtaagtgtagctcagttgatagctaccagagacaatgtttgcaggagccagggttcgaaccccagattccccacttctccacactttagaaaaagtgtg 28580421  T
Q  531 tgatctagccactaggctattgaac 555  Q
    |||||| ||||||||||||||||||    
T  28580420 tgatcttgccactaggctattgaac 28580396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 437 - 544
Target Start/End: Original strand, 30327657 - 30327764
Alignment:
Q  437 taagtgtagctcagttggtagctaccagaaataatggttgtaggggttggggttcgaaccccgaatttcccacttctccgcactttaaaatgtgtg-atc 535  Q
    |||||||||||||||||||||||| |||| |||||   || |||||  |||||||||||||||||||  |||||||||| |||  ||| ||||||| |||    
T  30327657 taagtgtagctcagttggtagctatcagagataatttatgcaggggccggggttcgaaccccgaattcgccacttctccacac-ataatatgtgtgaatc 30327755  T
Q  536 tagccacta 544  Q
    |||||||||    
T  30327756 tagccacta 30327764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 435 - 471
Target Start/End: Complemental strand, 43406112 - 43406076
Alignment:
Q  435 cgtaagtgtagctcagttggtagctaccagaaataat 471  Q
    ||||||||||||||||||||||||||||||| |||||    
T  43406112 cgtaagtgtagctcagttggtagctaccagagataat 43406076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 434 - 464
Target Start/End: Complemental strand, 36730290 - 36730260
Alignment:
Q  434 ccgtaagtgtagctcagttggtagctaccag 464  Q
    |||||||||||||||||||||||||||||||    
T  36730290 ccgtaagtgtagctcagttggtagctaccag 36730260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 432 - 511
Target Start/End: Original strand, 12959704 - 12959783
Alignment:
Q  432 tcccgtaagtgtagctcagttggtagctaccagaaataatggttgtaggggttggggttcgaaccccgaatttcccactt 511  Q
    ||||||||||||||||||||||||||||| |||  ||||    || |||||||||||||||||||||  ||| |||||||    
T  12959704 tcccgtaagtgtagctcagttggtagctatcagggataacttgtgcaggggttggggttcgaaccccagattccccactt 12959783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 432 - 515
Target Start/End: Original strand, 28300084 - 28300167
Alignment:
Q  432 tcccgtaagtgtagctcagttggtagctaccagaaataatggttgtaggggttggggttcgaaccccgaatttcccacttctcc 515  Q
    ||||||| ||||||||||||||||||||||||   |||||   || |||||  ||||||||||||||| ||| |||||||||||    
T  28300084 tcccgtaggtgtagctcagttggtagctaccaatgataatttgtgcaggggccggggttcgaaccccggattccccacttctcc 28300167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 432 - 464
Target Start/End: Complemental strand, 9209674 - 9209642
Alignment:
Q  432 tcccgtaagtgtagctcagttggtagctaccag 464  Q
    ||||||||||||||||| |||||||||||||||    
T  9209674 tcccgtaagtgtagctccgttggtagctaccag 9209642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 432 - 464
Target Start/End: Original strand, 31441264 - 31441296
Alignment:
Q  432 tcccgtaagtgtagctcagttggtagctaccag 464  Q
    ||||||| |||||||||||||||||||||||||    
T  31441264 tcccgtaggtgtagctcagttggtagctaccag 31441296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 432 - 550
Target Start/End: Complemental strand, 6922745 - 6922627
Alignment:
Q  432 tcccgtaagtgtagctcagttggtagctaccagaaataatggttgtaggggttggggttcgaaccccgaatttcccacttctccgcactttaaaatgtgt 531  Q
    |||||||||||||| |||||||||||||||||  ||||||   || |||||| ||||||| ||| ||  ||| ||||||||||| || | |||  |||||    
T  6922745 tcccgtaagtgtagttcagttggtagctaccatgaataatttgtgcaggggtcggggttcaaactccagattccccacttctccaca-tataatgtgtgt 6922647  T
Q  532 g-atctagccactaggctat 550  Q
    | ||||||||||||||||||    
T  6922646 gaatctagccactaggctat 6922627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 432 - 515
Target Start/End: Complemental strand, 20599503 - 20599420
Alignment:
Q  432 tcccgtaagtgtagctcagttggtagctaccagaaataatggttgtaggggttggggttcgaaccccgaatttcccacttctcc 515  Q
    |||||||||||||||||||||||||||||||||  ||| |   || | |||| |||||| |||||||| ||| |||||||||||    
T  20599503 tcccgtaagtgtagctcagttggtagctaccagggatattatgtgcaagggtcggggtttgaaccccggattccccacttctcc 20599420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 488 - 551
Target Start/End: Complemental strand, 58700 - 58637
Alignment:
Q  488 gttcgaaccccgaatttcccacttctccgcactttaaaatgtgtga-tctagccactaggctatt 551  Q
    |||||||||||| ||||||||||||||| ||| || | |||||||| |||||||||||| |||||    
T  58700 gttcgaaccccggatttcccacttctccacacatt-atatgtgtgattctagccactagactatt 58637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 471
Target Start/End: Original strand, 23705 - 23741
Alignment:
Q  435 cgtaagtgtagctcagttggtagctaccagaaataat 471  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  23705 cgtaagtgtagctcagttggtagttaccataaataat 23741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University