View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11085_high_31 (Length: 215)
Name: NF11085_high_31
Description: NF11085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11085_high_31 |
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Alignment Details
Target: chr2 (Bit Score: 112; Significance: 8e-57; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 2323009 - 2323140
Alignment:
| Q |
1 |
tacaagcaatagaagaaatctgctctaacagattcagttagagattacagactatctaattaatcaaactccaagtgtgtaacaattttagaagaacatt |
100 |
Q |
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| T |
2323009 |
tacaagcaatagaagaaatctgctctaacagattcagttagagattacagactatctaattaatcaaactccaagtgtgtaataattttagaacaacatt |
2323108 |
T |
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| Q |
101 |
tgtgcggtcacaaccctaaatacaattcattt |
132 |
Q |
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| T |
2323109 |
tgtgtggtcacaatcctaaatataattcattt |
2323140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 2311959 - 2312150
Alignment:
| Q |
1 |
tacaagcaatagaagaaatctgctctaacagattcagttagagattacaga--------ctatctaattaatcaaactccaagtgtgtaacaattttaga |
92 |
Q |
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| T |
2311959 |
tacaagcaatagaagaaatctgctataacatattcagttagagattacagttcaaaagcctatctaattaatcaa-ctccaagtgtgtaacagttttaga |
2312057 |
T |
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| Q |
93 |
agaacatttgtgcggtcacaaccctaaatacaattcatttgcaccctcacaaaacttgaaaaaggtataatagaaagcaattgaataaatcct |
185 |
Q |
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| T |
2312058 |
agaacacttctatggtcaaaaccccaaatataattcattcgcacattcacaaaacttgaaaaaggtacaatagaaaacaattgaataaatcct |
2312150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 2296145 - 2296336
Alignment:
| Q |
1 |
tacaagcaatagaagaaatctgctctaacagattcagttagagattacagac--------tatctaattaatcaaactccaagtgtgtaacaattttaga |
92 |
Q |
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| T |
2296145 |
tacaagcaatagaagaaatctgctataacatattcagttagagattacagttcaaaagcttatctaattaatcaa-ctccaagtgtgtaacagttttaga |
2296243 |
T |
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| Q |
93 |
agaacatttgtgcggtcacaaccctaaatacaattcatttgcaccctcacaaaacttgaaaaaggtataatagaaagcaattgaataaatcct |
185 |
Q |
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| T |
2296244 |
agaacacttctatggtcaaaaccccaaatataattcattcgcacatttacaaaacttgaaaaaggtacaatagaagacaattgaataaatcct |
2296336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 67 - 136
Target Start/End: Original strand, 2335185 - 2335254
Alignment:
| Q |
67 |
aactccaagtgtgtaacaattttagaagaacatttgtgcggtcacaaccctaaatacaattcatttgcac |
136 |
Q |
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| T |
2335185 |
aactccaagtgtgtaacaattttagaggaacatatatgtggttataaccctaaatataattcatttgcac |
2335254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 168
Target Start/End: Complemental strand, 32340151 - 32340075
Alignment:
| Q |
94 |
gaacatttgtgcggtcacaaccctaaatacaattcattt--gcaccctcacaaaacttgaaaaaggtataatagaaa |
168 |
Q |
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| T |
32340151 |
gaacacttgtgcggtcacaaccctaaatataattcatttgagcaccctcacacaatttaaaaaagatacaatagaaa |
32340075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 166
Target Start/End: Complemental strand, 4210516 - 4210442
Alignment:
| Q |
94 |
gaacatttgtgcggtcacaaccctaaatacaattcatttgca--ccctcacaaaacttgaaaaaggtataataga |
166 |
Q |
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| T |
4210516 |
gaacatttgtgtggtcacaacctcgaatataattcatttgaagacactcacaaaacttgaaaaaggtacaataga |
4210442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 180
Target Start/End: Original strand, 21992707 - 21992784
Alignment:
| Q |
105 |
cggtcacaaccctaaatacaattcattt--gcaccctcacaaaacttgaaaaaggtataatagaaagcaattgaataa |
180 |
Q |
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| T |
21992707 |
cggtcacaaccccaaatataattcatttaggcacactcacacaacttaaaaaaggtacaatataaaacaatttaataa |
21992784 |
T |
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