View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11085_low_11 (Length: 398)
Name: NF11085_low_11
Description: NF11085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11085_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 32790377 - 32789997
Alignment:
| Q |
1 |
atatacatacaagtgttcatgtcagtcgataaactcaaataaatcaatatgaatggttgtaactctgttgattgttaaggtaaatcctgattttgttcac |
100 |
Q |
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| T |
32790377 |
atatacatacaagtgttcatgtcagtcgataaactcaaataaatcaatatgaatggttgtaactctgttgactgttaaggtaaatcctgattttgttcac |
32790278 |
T |
|
| Q |
101 |
ggataaagtcgacaaaactttggtaatcaaagtgctgctaaactagcttgtatgatgggttatggtggtttagctgcttatctttcagaaaagtctctag |
200 |
Q |
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| T |
32790277 |
ggataaagtggacaaaactttggtaatcaaagtgctgctaaactagcttgtatgatgggttatggtggtttagcagcttatctttcagaaaagtctctag |
32790178 |
T |
|
| Q |
201 |
ttgagcagcttggctggaaatatcaacttattggaaacaggcacgactgatcattgaattatgataatcttaccagggaccagctgattctgaaggaaac |
300 |
Q |
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| T |
32790177 |
ttgagcagcttggctggaaatatcaacttattggaaacaggcacgactgatcattgaattatgataatcttaccagggaccagctgattctgaaggaaac |
32790078 |
T |
|
| Q |
301 |
tttagcagaaacatggcgtggagattatgcgtgggaattgttaagatctaccattatagttatttagttaatgagagaagt |
381 |
Q |
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| T |
32790077 |
tttagcagaaacatggcgtggagattatgcgtgggaattgttaagatctaccattatagttatttagttaatgagagaagt |
32789997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 112 - 328
Target Start/End: Complemental strand, 48283315 - 48283083
Alignment:
| Q |
112 |
acaaaactttggtaatcaaagtgctgctaaactagcttgtatgatgggttatggtggtttagctgcttatctttcagaaaagtctctagttgagcagct- |
210 |
Q |
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||||||| |||||| ||||||||||| || || |||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
48283315 |
acaaaaccctggtaaacaaagtgctgccaaccttgcttgtatgacgggttattatggtttagcagcttatctttcagaaaagtctctagttgagcagctc |
48283216 |
T |
|
| Q |
211 |
------------tggctggaaatatcaac---ttattggaaacaggcacgactgatcattgaattatgataatcttaccagggaccagctgattctgaag |
295 |
Q |
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| ||||||||||| ||| |||||||||||||||||| |||||||||||| | ||| || ||||||||||||||||||||| ||||| |
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| T |
48283215 |
aatacatgagcttagctggaaatattaacggtttattggaaacaggcacggctgatcattgaactctgagaaccttaccagggaccagctgattttgaag |
48283116 |
T |
|
| Q |
296 |
gaaactttagcagaaacatggcgtggagattat |
328 |
Q |
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||| ||||||||||||||||| | ||||||||| |
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| T |
48283115 |
gaacctttagcagaaacatggtgaggagattat |
48283083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 50271416 - 50271467
Alignment:
| Q |
157 |
gggttatggtggtttagctgcttatctttcagaaaagtctctagttgagcag |
208 |
Q |
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||||||| ||| ||||| ||||||||||| ||||||||||||||||||||| |
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| T |
50271416 |
gggttatcatggcttagcagcttatctttcggaaaagtctctagttgagcag |
50271467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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