View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11085_low_14 (Length: 319)
Name: NF11085_low_14
Description: NF11085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11085_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 302
Target Start/End: Original strand, 4243890 - 4244173
Alignment:
| Q |
19 |
caccggtcatgctcgattcatcaactctcaacgaatgtccatctacgaacaatccatcggctggtacttgatcaccaatcttcaaacaaacaacatcacc |
118 |
Q |
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| T |
4243890 |
caccggtcatgctcgattcatcaactctcaacgaatgtccatctacgaacaatccatcggctggtacttgatcaccaatcttcaaacaaacaacatcacc |
4243989 |
T |
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| Q |
119 |
aacaacaatatcgaatattgataccttttgttggcgcccactacgaaccaaatcaatttgaatatcattgctcacttgagacaatttatcaaattgtttg |
218 |
Q |
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| T |
4243990 |
aacaacaatatcgaatattgataccttttgtcggcgcccactacgaaccaaatcaatttgaatatcattgctcacttgagacaatttatcaaattgtttg |
4244089 |
T |
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| Q |
219 |
ttttgtttaaagttgcttattgcagacattgaaataacaatgaaaacagctagaaaaatgctaccaccatcataccaaccttct |
302 |
Q |
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| T |
4244090 |
ttttgtttaaagttgcttattgcagacattgaaataacaatgaaaacagctagaaaaatgctgccaccatcataccaaccttct |
4244173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 302
Target Start/End: Original strand, 6186946 - 6187229
Alignment:
| Q |
19 |
caccggtcatgctcgattcatcaactctcaacgaatgtccatctacgaacaatccatcggctggtacttgatcaccaatcttcaaacaaacaacatcacc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
6186946 |
caccggtcatgctcgattcatcaactctcaacgaatgtccatctacgaacaatccatcagccggtacttgatcaccaatcttcaaacaaacaacatcacc |
6187045 |
T |
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| Q |
119 |
aacaacaatatcgaatattgataccttttgttggcgcccactacgaaccaaatcaatttgaatatcattgctcacttgagacaatttatcaaattgtttg |
218 |
Q |
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| T |
6187046 |
aacaacaatatcaaatatagatacctttagccgacgaccacttcgaaccaaatcaatttgaatgtcattgctaacttgagacaatttatcaaattgtttg |
6187145 |
T |
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| Q |
219 |
ttttgtttaaagttgcttattgcagacattgaaataacaatgaaaacagctagaaaaatgctaccaccatcataccaaccttct |
302 |
Q |
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|||||||| ||||||||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6187146 |
ttttgtttgaagttgcttattgatgacatcgaaataacgatgaaaacagctaggaaaatgctaccaccatcataccaaccttct |
6187229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 23 - 148
Target Start/End: Original strand, 6170004 - 6170129
Alignment:
| Q |
23 |
ggtcatgctcgattcatcaactctcaacgaatgtccatctacgaacaatccatcggctggtacttgatcaccaatcttcaaacaaacaacatcaccaaca |
122 |
Q |
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||||||||| |||||||||||||||| |||| |||||| | ||| ||||||| ||||||||||||||| |||||| ||||||||||||||||| |
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| T |
6170004 |
ggtcatgcttcattcatcaactctcaaggaatttccatcgatgaataatccatttatcaatacttgatcaccaatattcaaaaaaacaacatcaccaaca |
6170103 |
T |
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| Q |
123 |
acaatatcgaatattgataccttttg |
148 |
Q |
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||||| || || || |||| |||||| |
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| T |
6170104 |
acaatctcaaagatcgatatcttttg |
6170129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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